Analysis of interatomic Contacts of Structural Units in PDB entry:
6NKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NKF entry

There are 4 chains in PDB entry 6NKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2HIS 302
B
 THR 2GLY 296
C
 THR 2HIS 303
D
 THR 2GLY 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6NKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 49Right-handed alpha
Helix 2
AA2
A
79 89Right-handed alpha
Helix 3
AA3
A
107 123Right-handed alpha
Helix 4
AA4
A
124 127Right-handed 310
Helix 5
AA5
A
140 152Right-handed alpha
Helix 6
AA6
A
155 159Right-handed 310
Helix 7
AA7
A
185 189Right-handed 310
Helix 8
AA8
A
200 207Right-handed alpha
Helix 9
AA9
A
209 212Right-handed 310
Helix 10
AB1
A
213 220Right-handed alpha
Helix 11
AB2
A
221 226Right-handed 310
Helix 12
AB3
A
245 259Right-handed alpha
Helix 13
AB4
A
278 294Right-handed alpha
Helix 14
AB5
B
43 49Right-handed alpha
Helix 15
AB6
B
79 89Right-handed alpha
Helix 16
AB7
B
107 123Right-handed alpha
Helix 17
AB8
B
124 127Right-handed 310
Helix 18
AB9
B
140 152Right-handed alpha
Helix 19
AC1
B
155 159Right-handed 310
Helix 20
AC2
B
182 189Right-handed 310
Helix 21
AC3
B
200 207Right-handed alpha
Helix 22
AC4
B
209 212Right-handed 310
Helix 23
AC5
B
213 220Right-handed alpha
Helix 24
AC6
B
221 226Right-handed 310
Helix 25
AC7
B
245 259Right-handed alpha
Helix 26
AC8
B
278 294Right-handed alpha
Helix 27
AC9
C
43 49Right-handed alpha
Helix 28
AD1
C
79 89Right-handed alpha
Helix 29
AD2
C
107 123Right-handed alpha
Helix 30
AD3
C
124 127Right-handed 310
Helix 31
AD4
C
140 152Right-handed alpha
Helix 32
AD5
C
155 159Right-handed 310
Helix 33
AD6
C
182 189Right-handed 310
Helix 34
AD7
C
200 207Right-handed alpha
Helix 35
AD8
C
209 212Right-handed 310
Helix 36
AD9
C
213 220Right-handed alpha
Helix 37
AE1
C
221 226Right-handed 310
Helix 38
AE2
C
245 259Right-handed alpha
Helix 39
AE3
C
278 294Right-handed alpha
Helix 40
AE4
D
43 49Right-handed alpha
Helix 41
AE5
D
79 89Right-handed alpha
Helix 42
AE6
D
107 123Right-handed alpha
Helix 43
AE7
D
124 127Right-handed 310
Helix 44
AE8
D
140 152Right-handed alpha
Helix 45
AE9
D
155 159Right-handed 310
Helix 46
AF1
D
185 189Right-handed 310
Helix 47
AF2
D
200 207Right-handed alpha
Helix 48
AF3
D
209 212Right-handed 310
Helix 49
AF4
D
213 220Right-handed alpha
Helix 50
AF5
D
221 226Right-handed 310
Helix 51
AF6
D
245 259Right-handed alpha
Helix 52
AF7
D
278 294Right-handed alpha
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There are 4 sheets in PDB entry 6NKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
D
263 269parallel
Strand 3
D
233 238parallel
Strand 4
D
173 177parallel
Strand 5
D
129 139parallel
Strand 6
D
58 64parallel
Strand 7
D
92 96parallel
Strand 8
D
32 41anti-parallel
Strand 9
D
18 29anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 29first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
92 96anti-parallel
Strand 4
A
58 64parallel
Strand 5
A
129 139parallel
Strand 6
A
173 177parallel
Strand 7
A
233 238parallel
Strand 8
A
263 268parallel
Strand 9
D
6 8parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
C
263 268parallel
Strand 3
C
233 238parallel
Strand 4
C
173 177parallel
Strand 5
C
129 139parallel
Strand 6
C
58 64parallel
Strand 7
C
92 96parallel
Strand 8
C
32 41anti-parallel
Strand 9
C
18 29anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 29first strand
Strand 2
B
32 41anti-parallel
Strand 3
B
92 96anti-parallel
Strand 4
B
58 64parallel
Strand 5
B
129 139parallel
Strand 6
B
173 177parallel
Strand 7
B
233 238parallel
Strand 8
B
263 269parallel
Strand 9
C
6 9parallel
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