Analysis of interatomic Contacts of Structural Units in PDB entry:
6NKG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NKG entry

There is 1 chain in PDB entry 6NKG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4THR 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6NKG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 30Right-handed 310
Helix 2
AA2
A
31 41Right-handed alpha
Helix 3
AA3
A
56 61Right-handed alpha
Helix 4
AA4
A
64 82Right-handed alpha
Helix 5
AA5
A
93 104Right-handed alpha
Helix 6
AA6
A
122 141Right-handed alpha
Helix 7
AA7
A
144 156Right-handed alpha
Helix 8
AA8
A
162 175Right-handed alpha
Helix 9
AA9
A
176 180Right-handed 310
Helix 10
AB1
A
198 207Right-handed alpha
Helix 11
AB2
A
229 242Right-handed alpha
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There are 2 sheets in PDB entry 6NKG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
17 21parallel
Strand 4
A
87 92parallel
Strand 5
A
111 114parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 189first strand
Strand 2
A
212 217parallel
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