Analysis of interatomic Contacts of Structural Units in PDB entry:
6NKH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NKH entry

There are 4 chains in PDB entry 6NKH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4ARG 264
B
 THR 4ARG 264
C
 ARG 6ARG 264
D
 PRO 3ARG 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6NKH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 12Right-handed alpha
Helix 2
AA2
A
23 36Right-handed alpha
Helix 3
AA3
A
46 59Right-handed alpha
Helix 4
AA4
A
78 95Right-handed alpha
Helix 5
AA5
A
114 118Right-handed 310
Helix 6
AA6
A
119 131Right-handed alpha
Helix 7
AA7
A
131 141Right-handed alpha
Helix 8
AA8
A
142 144Right-handed 310
Helix 9
AA9
A
158 162Right-handed 310
Helix 10
AB1
A
168 189Right-handed alpha
Helix 11
AB2
A
204 212Right-handed alpha
Helix 12
AB3
A
214 226Right-handed alpha
Helix 13
AB4
A
233 247Right-handed alpha
Helix 14
AB5
A
260 264Right-handed 310
Helix 15
AB6
B
5 12Right-handed alpha
Helix 16
AB7
B
24 36Right-handed alpha
Helix 17
AB8
B
46 59Right-handed alpha
Helix 18
AB9
B
78 95Right-handed alpha
Helix 19
AC1
B
114 118Right-handed 310
Helix 20
AC2
B
119 131Right-handed alpha
Helix 21
AC3
B
131 141Right-handed alpha
Helix 22
AC4
B
142 144Right-handed 310
Helix 23
AC5
B
158 162Right-handed 310
Helix 24
AC6
B
168 189Right-handed alpha
Helix 25
AC7
B
214 226Right-handed alpha
Helix 26
AC8
B
233 247Right-handed alpha
Helix 27
AC9
B
260 264Right-handed 310
Helix 28
AD1
C
6 10Right-handed 310
Helix 29
AD2
C
23 36Right-handed alpha
Helix 30
AD3
C
46 59Right-handed alpha
Helix 31
AD4
C
78 95Right-handed alpha
Helix 32
AD5
C
114 118Right-handed 310
Helix 33
AD6
C
119 131Right-handed alpha
Helix 34
AD7
C
131 141Right-handed alpha
Helix 35
AD8
C
142 144Right-handed 310
Helix 36
AD9
C
158 162Right-handed 310
Helix 37
AE1
C
168 189Right-handed alpha
Helix 38
AE2
C
204 212Right-handed alpha
Helix 39
AE3
C
214 226Right-handed alpha
Helix 40
AE4
C
233 247Right-handed alpha
Helix 41
AE5
C
260 264Right-handed 310
Helix 42
AE6
D
4 12Right-handed alpha
Helix 43
AE7
D
23 36Right-handed alpha
Helix 44
AE8
D
46 59Right-handed alpha
Helix 45
AE9
D
81 95Right-handed alpha
Helix 46
AF1
D
114 118Right-handed 310
Helix 47
AF2
D
119 131Right-handed alpha
Helix 48
AF3
D
131 141Right-handed alpha
Helix 49
AF4
D
142 144Right-handed 310
Helix 50
AF5
D
158 162Right-handed 310
Helix 51
AF6
D
168 189Right-handed alpha
Helix 52
AF7
D
217 226Right-handed alpha
Helix 53
AF8
D
233 247Right-handed alpha
Helix 54
AF9
D
260 264Right-handed 310
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There are 4 sheets in PDB entry 6NKH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
39 44parallel
Strand 3
A
15 19parallel
Strand 4
A
101 104parallel
Strand 5
A
152 156parallel
Strand 6
A
193 199parallel
Strand 7
A
254 257parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
39 44parallel
Strand 3
B
15 19parallel
Strand 4
B
101 104parallel
Strand 5
B
152 156parallel
Strand 6
B
193 199parallel
Strand 7
B
254 257parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 73first strand
Strand 2
C
39 44parallel
Strand 3
C
15 19parallel
Strand 4
C
101 104parallel
Strand 5
C
152 156parallel
Strand 6
C
193 199parallel
Strand 7
C
254 257parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 70first strand
Strand 2
D
39 43parallel
Strand 3
D
15 19parallel
Strand 4
D
101 104parallel
Strand 5
D
152 156parallel
Strand 6
D
193 199parallel
Strand 7
D
254 257parallel
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