Analysis of interatomic Contacts of Structural Units in PDB entry:
6NKI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NKI entry

There is 1 chain in PDB entry 6NKI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2004LEU 2427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6NKI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2006 2017Right-handed alpha
Helix 2
AA2
A
2046 2059Right-handed alpha
Helix 3
AA3
A
2073 2088Right-handed alpha
Helix 4
AA4
A
2092 2097Right-handed 310
Helix 5
AA5
A
2108 2113Right-handed 310
Helix 6
AA6
A
2114 2119Right-handed alpha
Helix 7
AA7
A
2151 2172Right-handed alpha
Helix 8
AA8
A
2216 2236Right-handed alpha
Helix 9
AA9
A
2262 2275Right-handed alpha
Helix 10
AB1
A
2291 2304Right-handed alpha
Helix 11
AB2
A
2334 2346Right-handed alpha
Helix 12
AB3
A
2353 2367Right-handed alpha
Helix 13
AB4
A
2377 2385Right-handed alpha
Helix 14
AB5
A
2403 2426Right-handed alpha
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There are 3 sheets in PDB entry 6NKI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2099 2103first strand
Strand 2
A
2062 2069parallel
Strand 3
A
2037 2042parallel
Strand 4
A
2137 2140parallel
Strand 5
A
2177 2181parallel
Strand 6
A
2241 2245parallel
Strand 7
A
2325 2327parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2248 2250first strand
Strand 2
A
2285 2290parallel
Strand 3
A
2331 2333anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2276 2278first strand
Strand 2
A
2350 2352parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il