Analysis of interatomic Contacts of Structural Units in PDB entry:
6NKJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NKJ entry

There are 2 chains in PDB entry 6NKJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 421
B	MET 1	GLU 421

There are 36 helices in PDB entry 6NKJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	33	Right-handed alpha
Helix 2	AA2	A	49	61	Right-handed alpha
Helix 3	AA3	A	88	93	Right-handed alpha
Helix 4	AA4	A	95	100	Right-handed 310
Helix 5	AA5	A	101	110	Right-handed alpha
Helix 6	AA6	A	127	137	Right-handed alpha
Helix 7	AA7	A	166	178	Right-handed alpha
Helix 8	AA8	A	192	205	Right-handed alpha
Helix 9	AA9	A	235	249	Right-handed alpha
Helix 10	AB1	A	259	274	Right-handed alpha
Helix 11	AB2	A	289	293	Right-handed 310
Helix 12	AB3	A	307	309	Right-handed 310
Helix 13	AB4	A	310	319	Right-handed alpha
Helix 14	AB5	A	336	343	Right-handed alpha
Helix 15	AB6	A	344	346	Right-handed 310
Helix 16	AB7	A	373	387	Right-handed alpha
Helix 17	AB8	A	398	402	Right-handed 310
Helix 18	AB9	A	405	413	Right-handed alpha
Helix 19	AC1	B	22	33	Right-handed alpha
Helix 20	AC2	B	49	61	Right-handed alpha
Helix 21	AC3	B	88	93	Right-handed alpha
Helix 22	AC4	B	95	100	Right-handed 310
Helix 23	AC5	B	101	110	Right-handed alpha
Helix 24	AC6	B	127	137	Right-handed alpha
Helix 25	AC7	B	166	178	Right-handed alpha
Helix 26	AC8	B	192	205	Right-handed alpha
Helix 27	AC9	B	235	249	Right-handed alpha
Helix 28	AD1	B	259	274	Right-handed alpha
Helix 29	AD2	B	289	293	Right-handed 310
Helix 30	AD3	B	307	309	Right-handed 310
Helix 31	AD4	B	310	319	Right-handed alpha
Helix 32	AD5	B	336	343	Right-handed alpha
Helix 33	AD6	B	344	346	Right-handed 310
Helix 34	AD7	B	373	387	Right-handed alpha
Helix 35	AD8	B	398	402	Right-handed 310
Helix 36	AD9	B	405	413	Right-handed alpha

There are 14 sheets in PDB entry 6NKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	370	first strand
Strand 2	A	390	394	parallel
Strand 3	A	3	7	anti-parallel
Strand 4	A	417	420	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	252	256	parallel
Strand 3	A	283	287	anti-parallel
Strand 4	A	276	280	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	225	226	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	69	first strand
Strand 2	A	74	78	anti-parallel
Strand 3	A	41	44	anti-parallel
Strand 4	A	229	231	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	111	115	parallel
Strand 3	A	147	152	anti-parallel
Strand 4	A	139	144	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	161	first strand
Strand 2	A	183	187	parallel
Strand 3	A	216	220	anti-parallel
Strand 4	A	209	210	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	299	first strand
Strand 2	A	324	328	parallel
Strand 3	A	355	359	anti-parallel
Strand 4	A	350	352	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	370	first strand
Strand 2	B	390	394	parallel
Strand 3	B	3	7	anti-parallel
Strand 4	B	417	420	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	252	256	parallel
Strand 3	B	283	287	anti-parallel
Strand 4	B	276	280	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	225	226	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	69	first strand
Strand 2	B	74	78	anti-parallel
Strand 3	B	41	44	anti-parallel
Strand 4	B	229	231	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	111	115	parallel
Strand 3	B	147	152	anti-parallel
Strand 4	B	139	144	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	183	187	parallel
Strand 3	B	216	220	anti-parallel
Strand 4	B	209	210	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	299	first strand
Strand 2	B	324	328	parallel
Strand 3	B	355	359	anti-parallel
Strand 4	B	350	352	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NKJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NKJ