Analysis of interatomic Contacts of Structural Units in PDB entry:
6NKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NKM entry

There are 6 chains in PDB entry 6NKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9VAL 265
B
 THR 9VAL 265
C
 THR 9VAL 265
D
 THR 9VAL 265
E
 THR 9VAL 265
F
 THR 9HIS 102
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 88 helices in PDB entry 6NKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 37Right-handed alpha
Helix 2
AA2
A
47 62Right-handed alpha
Helix 3
AA3
A
66 68Right-handed 310
Helix 4
AA4
A
82 96Right-handed alpha
Helix 5
AA5
A
115 119Right-handed 310
Helix 6
AA6
A
120 126Right-handed alpha
Helix 7
AA7
A
127 132Right-handed alpha
Helix 8
AA8
A
132 142Right-handed alpha
Helix 9
AA9
A
143 145Right-handed 310
Helix 10
AB1
A
159 163Right-handed 310
Helix 11
AB2
A
169 190Right-handed alpha
Helix 12
AB3
A
205 213Right-handed alpha
Helix 13
AB4
A
215 226Right-handed alpha
Helix 14
AB5
A
234 248Right-handed alpha
Helix 15
AB6
A
261 265Right-handed 310
Helix 16
AB7
B
24 37Right-handed alpha
Helix 17
AB8
B
47 62Right-handed alpha
Helix 18
AB9
B
66 68Right-handed 310
Helix 19
AC1
B
79 96Right-handed alpha
Helix 20
AC2
B
115 119Right-handed 310
Helix 21
AC3
B
120 126Right-handed alpha
Helix 22
AC4
B
127 132Right-handed alpha
Helix 23
AC5
B
132 142Right-handed alpha
Helix 24
AC6
B
143 145Right-handed 310
Helix 25
AC7
B
159 163Right-handed 310
Helix 26
AC8
B
169 190Right-handed alpha
Helix 27
AC9
B
205 213Right-handed alpha
Helix 28
AD1
B
215 226Right-handed alpha
Helix 29
AD2
B
234 248Right-handed alpha
Helix 30
AD3
B
261 265Right-handed 310
Helix 31
AD4
C
24 37Right-handed alpha
Helix 32
AD5
C
47 62Right-handed alpha
Helix 33
AD6
C
82 96Right-handed alpha
Helix 34
AD7
C
115 119Right-handed 310
Helix 35
AD8
C
120 126Right-handed alpha
Helix 36
AD9
C
127 132Right-handed alpha
Helix 37
AE1
C
132 142Right-handed alpha
Helix 38
AE2
C
143 145Right-handed 310
Helix 39
AE3
C
159 163Right-handed 310
Helix 40
AE4
C
169 190Right-handed alpha
Helix 41
AE5
C
205 213Right-handed alpha
Helix 42
AE6
C
215 226Right-handed alpha
Helix 43
AE7
C
234 248Right-handed alpha
Helix 44
AE8
C
261 265Right-handed 310
Helix 45
AE9
D
24 37Right-handed alpha
Helix 46
AF1
D
47 62Right-handed alpha
Helix 47
AF2
D
66 68Right-handed 310
Helix 48
AF3
D
82 96Right-handed alpha
Helix 49
AF4
D
115 119Right-handed 310
Helix 50
AF5
D
120 126Right-handed alpha
Helix 51
AF6
D
126 132Right-handed alpha
Helix 52
AF7
D
132 142Right-handed alpha
Helix 53
AF8
D
143 145Right-handed 310
Helix 54
AF9
D
159 163Right-handed 310
Helix 55
AG1
D
169 190Right-handed alpha
Helix 56
AG2
D
205 213Right-handed alpha
Helix 57
AG3
D
215 226Right-handed alpha
Helix 58
AG4
D
234 248Right-handed alpha
Helix 59
AG5
D
261 265Right-handed 310
Helix 60
AG6
E
24 37Right-handed alpha
Helix 61
AG7
E
47 62Right-handed alpha
Helix 62
AG8
E
66 68Right-handed 310
Helix 63
AG9
E
82 96Right-handed alpha
Helix 64
AH1
E
115 119Right-handed 310
Helix 65
AH2
E
120 132Right-handed alpha
Helix 66
AH3
E
132 142Right-handed alpha
Helix 67
AH4
E
143 145Right-handed 310
Helix 68
AH5
E
159 163Right-handed 310
Helix 69
AH6
E
169 190Right-handed alpha
Helix 70
AH7
E
205 213Right-handed alpha
Helix 71
AH8
E
215 226Right-handed alpha
Helix 72
AH9
E
234 248Right-handed alpha
Helix 73
AI1
E
261 265Right-handed 310
Helix 74
AI2
F
24 37Right-handed alpha
Helix 75
AI3
F
47 62Right-handed alpha
Helix 76
AI4
F
66 68Right-handed 310
Helix 77
AI5
F
82 96Right-handed alpha
Helix 78
AI6
F
115 119Right-handed 310
Helix 79
AI7
F
120 126Right-handed alpha
Helix 80
AI8
F
126 132Right-handed alpha
Helix 81
AI9
F
132 142Right-handed alpha
Helix 82
AJ1
F
143 145Right-handed 310
Helix 83
AJ2
F
159 163Right-handed 310
Helix 84
AJ3
F
169 190Right-handed alpha
Helix 85
AJ4
F
205 213Right-handed alpha
Helix 86
AJ5
F
215 226Right-handed alpha
Helix 87
AJ6
F
234 248Right-handed alpha
Helix 88
AJ7
F
261 265Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6NKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
40 45parallel
Strand 3
A
16 20parallel
Strand 4
A
102 105parallel
Strand 5
A
153 157parallel
Strand 6
A
194 200parallel
Strand 7
A
255 258parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 74first strand
Strand 2
B
40 45parallel
Strand 3
B
16 20parallel
Strand 4
B
102 105parallel
Strand 5
B
153 157parallel
Strand 6
B
194 200parallel
Strand 7
B
255 258parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 74first strand
Strand 2
C
40 45parallel
Strand 3
C
16 20parallel
Strand 4
C
102 105parallel
Strand 5
C
153 157parallel
Strand 6
C
194 200parallel
Strand 7
C
255 258parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 74first strand
Strand 2
D
40 45parallel
Strand 3
D
16 20parallel
Strand 4
D
102 105parallel
Strand 5
D
153 157parallel
Strand 6
D
194 200parallel
Strand 7
D
255 258parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
70 74first strand
Strand 2
E
40 45parallel
Strand 3
E
16 20parallel
Strand 4
E
102 105parallel
Strand 5
E
153 157parallel
Strand 6
E
194 200parallel
Strand 7
E
255 258parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
70 74first strand
Strand 2
F
40 45parallel
Strand 3
F
16 20parallel
Strand 4
F
102 105parallel
Strand 5
F
153 157parallel
Strand 6
F
194 200parallel
Strand 7
F
255 258parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il