Analysis of interatomic Contacts of Structural Units in PDB entry:
6NKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NKO entry

There are 4 chains in PDB entry 6NKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1ARG 194
B
 HIS -1ALA 190
C
 GLY -3GLY 189
D
 SER -2GLY 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 6NKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 22Right-handed alpha
Helix 2
AA2
A
29 39Right-handed alpha
Helix 3
AA3
A
64 73Right-handed alpha
Helix 4
AA4
A
76 87Right-handed alpha
Helix 5
AA5
A
109 117Right-handed 310
Helix 6
AA6
A
119 131Right-handed alpha
Helix 7
AA7
A
140 142Right-handed 310
Helix 8
AA8
A
143 154Right-handed alpha
Helix 9
AA9
A
157 161Right-handed 310
Helix 10
AB1
A
162 192Right-handed alpha
Helix 11
AB2
B
11 22Right-handed alpha
Helix 12
AB3
B
29 39Right-handed alpha
Helix 13
AB4
B
46 50Right-handed alpha
Helix 14
AB5
B
54 59Right-handed 310
Helix 15
AB6
B
64 73Right-handed alpha
Helix 16
AB7
B
76 87Right-handed alpha
Helix 17
AB8
B
112 117Right-handed 310
Helix 18
AB9
B
119 131Right-handed alpha
Helix 19
AC1
B
140 142Right-handed 310
Helix 20
AC2
B
143 153Right-handed alpha
Helix 21
AC3
B
157 161Right-handed 310
Helix 22
AC4
B
162 189Right-handed alpha
Helix 23
AC5
C
11 22Right-handed alpha
Helix 24
AC6
C
30 39Right-handed alpha
Helix 25
AC7
C
55 59Right-handed 310
Helix 26
AC8
C
64 73Right-handed alpha
Helix 27
AC9
C
76 87Right-handed alpha
Helix 28
AD1
C
110 116Right-handed alpha
Helix 29
AD2
C
119 131Right-handed alpha
Helix 30
AD3
C
140 142Right-handed 310
Helix 31
AD4
C
143 154Right-handed alpha
Helix 32
AD5
C
157 161Right-handed 310
Helix 33
AD6
C
162 188Right-handed alpha
Helix 34
AD7
D
11 22Right-handed alpha
Helix 35
AD8
D
29 39Right-handed alpha
Helix 36
AD9
D
47 49Right-handed 310
Helix 37
AE1
D
54 59Right-handed alpha
Helix 38
AE2
D
64 73Right-handed alpha
Helix 39
AE3
D
76 87Right-handed alpha
Helix 40
AE4
D
113 117Right-handed 310
Helix 41
AE5
D
119 131Right-handed alpha
Helix 42
AE6
D
140 142Right-handed 310
Helix 43
AE7
D
143 154Right-handed alpha
Helix 44
AE8
D
157 161Right-handed 310
Helix 45
AE9
D
162 189Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6NKO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
25 28parallel
Strand 3
A
1 5parallel
Strand 4
A
93 96parallel
Strand 5
A
136 138parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
25 28parallel
Strand 3
B
1 6parallel
Strand 4
B
93 97parallel
Strand 5
B
136 138parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 45first strand
Strand 2
C
25 28parallel
Strand 3
C
1 5parallel
Strand 4
C
93 96parallel
Strand 5
C
136 138parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 45first strand
Strand 2
D
25 28parallel
Strand 3
D
1 6parallel
Strand 4
D
93 97parallel
Strand 5
D
136 138parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il