Analysis of interatomic Contacts of Structural Units in PDB entry:
6NL1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NL1 entry

There is 1 chain in PDB entry 6NL1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 77LYS 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6NL1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 94Right-handed 310
Helix 2
AA2
A
105 109Right-handed alpha
Helix 3
AA3
A
110 112Right-handed 310
Helix 4
AA4
A
116 127Right-handed alpha
Helix 5
AA5
A
136 142Right-handed 310
Helix 6
AA6
A
163 166Right-handed 310
Helix 7
AA7
A
176 191Right-handed alpha
Helix 8
AA8
A
246 260Right-handed alpha
Helix 9
AA9
A
264 268Right-handed 310
Helix 10
AB1
A
278 282Right-handed 310
Helix 11
AB2
A
306 310Right-handed 310
Helix 12
AB3
A
315 320Right-handed alpha
Helix 13
AB4
A
324 334Right-handed alpha
Helix 14
AB5
A
344 352Right-handed alpha
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There are 3 sheets in PDB entry 6NL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
97 104anti-parallel
Strand 3
A
168 175anti-parallel
Strand 4
A
129 134anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
213 220anti-parallel
Strand 3
A
197 204anti-parallel
Strand 4
A
287 293parallel
Strand 5
A
269 274anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
213 220anti-parallel
Strand 3
A
340 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il