Analysis of interatomic Contacts of Structural Units in PDB entry:
6NLP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NLP entry

There are 2 chains in PDB entry 6NLP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 30ARG 381
B
 ASP 30ARG 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 6NLP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 65Right-handed alpha
Helix 2
AA2
A
75 86Right-handed alpha
Helix 3
AA3
A
94 104Right-handed alpha
Helix 4
AA4
A
111 121Right-handed 310
Helix 5
AA5
A
122 127Right-handed alpha
Helix 6
AA6
A
163 168Right-handed alpha
Helix 7
AA7
A
189 202Right-handed alpha
Helix 8
AA8
A
203 206Right-handed 310
Helix 9
AA9
A
214 230Right-handed alpha
Helix 10
AB1
A
238 249Right-handed alpha
Helix 11
AB2
A
257 267Right-handed alpha
Helix 12
AB3
A
295 307Right-handed alpha
Helix 13
AB4
A
308 320Right-handed alpha
Helix 14
AB5
A
325 331Right-handed 310
Helix 15
AB6
A
338 344Right-handed alpha
Helix 16
AB7
A
345 351Right-handed 310
Helix 17
AB8
A
366 379Right-handed alpha
Helix 18
AB9
B
57 65Right-handed alpha
Helix 19
AC1
B
75 86Right-handed alpha
Helix 20
AC2
B
94 104Right-handed alpha
Helix 21
AC3
B
111 121Right-handed 310
Helix 22
AC4
B
122 127Right-handed alpha
Helix 23
AC5
B
163 168Right-handed alpha
Helix 24
AC6
B
189 202Right-handed alpha
Helix 25
AC7
B
203 206Right-handed 310
Helix 26
AC8
B
214 230Right-handed alpha
Helix 27
AC9
B
238 249Right-handed alpha
Helix 28
AD1
B
257 267Right-handed alpha
Helix 29
AD2
B
295 307Right-handed alpha
Helix 30
AD3
B
308 320Right-handed alpha
Helix 31
AD4
B
325 331Right-handed 310
Helix 32
AD5
B
338 344Right-handed alpha
Helix 33
AD6
B
345 351Right-handed 310
Helix 34
AD7
B
366 379Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6NLP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
35 40parallel
Strand 3
A
90 93parallel
Strand 4
A
281 289anti-parallel
Strand 5
A
140 146anti-parallel
Strand 6
A
322 323anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
35 40parallel
Strand 3
A
90 93parallel
Strand 4
A
281 289anti-parallel
Strand 5
A
352 353parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 236first strand
Strand 2
A
182 185parallel
Strand 3
A
253 256parallel
Strand 4
A
148 152anti-parallel
Strand 5
A
271 274anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
35 40parallel
Strand 3
B
90 93parallel
Strand 4
B
281 289anti-parallel
Strand 5
B
140 146anti-parallel
Strand 6
B
322 323anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
35 40parallel
Strand 3
B
90 93parallel
Strand 4
B
281 289anti-parallel
Strand 5
B
352 353parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 236first strand
Strand 2
B
182 185parallel
Strand 3
B
253 256parallel
Strand 4
B
148 152anti-parallel
Strand 5
B
271 274anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il