Analysis of interatomic Contacts of Structural Units in PDB entry:
6NLQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NLQ entry

There are 4 chains in PDB entry 6NLQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 881LEU 985
B
 LYS 880LEU 985
C
 GLY 881LEU 985
D
 GLY 881LEU 985
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6NLQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
892 907Right-handed alpha
Helix 2
AA2
A
938 950Right-handed alpha
Helix 3
AA3
A
969 985Right-handed alpha
Helix 4
AA4
B
892 907Right-handed alpha
Helix 5
AA5
B
938 950Right-handed alpha
Helix 6
AA6
B
969 985Right-handed alpha
Helix 7
AA7
C
892 907Right-handed alpha
Helix 8
AA8
C
938 950Right-handed alpha
Helix 9
AA9
C
969 985Right-handed alpha
Helix 10
AB1
D
892 907Right-handed alpha
Helix 11
AB2
D
938 950Right-handed alpha
Helix 12
AB3
D
969 985Right-handed alpha
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There are 4 sheets in PDB entry 6NLQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
883 887first strand
Strand 2
A
911 917parallel
Strand 3
A
922 928anti-parallel
Strand 4
A
960 966anti-parallel
Strand 5
A
953 956anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
883 887first strand
Strand 2
B
911 917parallel
Strand 3
B
922 928anti-parallel
Strand 4
B
960 966anti-parallel
Strand 5
B
953 956anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
883 887first strand
Strand 2
C
911 917parallel
Strand 3
C
922 928anti-parallel
Strand 4
C
960 966anti-parallel
Strand 5
C
953 956anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
883 887first strand
Strand 2
D
911 917parallel
Strand 3
D
922 928anti-parallel
Strand 4
D
960 966anti-parallel
Strand 5
D
953 956anti-parallel
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