Analysis of interatomic Contacts of Structural Units in PDB entry:
6NLT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NLT entry

There are 2 chains in PDB entry 6NLT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 253
B
 ASN 2PHE 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6NLT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 28Right-handed alpha
Helix 2
AA2
A
38 42Right-handed alpha
Helix 3
AA3
A
82 90Right-handed alpha
Helix 4
AA4
A
95 100Right-handed alpha
Helix 5
AA5
A
101 105Right-handed 310
Helix 6
AA6
A
114 125Right-handed alpha
Helix 7
AA7
A
127 142Right-handed alpha
Helix 8
AA8
A
142 157Right-handed alpha
Helix 9
AA9
A
158 160Right-handed 310
Helix 10
AB1
A
161 182Right-handed alpha
Helix 11
AB2
A
187 189Right-handed 310
Helix 12
AB3
A
190 196Right-handed alpha
Helix 13
AB4
A
204 215Right-handed alpha
Helix 14
AB5
A
219 242Right-handed alpha
Helix 15
AB6
B
8 28Right-handed alpha
Helix 16
AB7
B
38 42Right-handed alpha
Helix 17
AB8
B
82 90Right-handed alpha
Helix 18
AB9
B
95 100Right-handed alpha
Helix 19
AC1
B
101 105Right-handed 310
Helix 20
AC2
B
114 125Right-handed alpha
Helix 21
AC3
B
127 142Right-handed alpha
Helix 22
AC4
B
142 157Right-handed alpha
Helix 23
AC5
B
158 160Right-handed 310
Helix 24
AC6
B
161 182Right-handed alpha
Helix 25
AC7
B
187 189Right-handed 310
Helix 26
AC8
B
190 197Right-handed alpha
Helix 27
AC9
B
204 215Right-handed alpha
Helix 28
AD1
B
219 242Right-handed alpha
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There are 2 sheets in PDB entry 6NLT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 69first strand
Strand 2
A
74 81anti-parallel
Strand 3
A
51 57parallel
Strand 4
A
31 37anti-parallel
Strand 5
A
107 111anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 69first strand
Strand 2
B
74 81anti-parallel
Strand 3
B
51 57parallel
Strand 4
B
31 37anti-parallel
Strand 5
B
107 111anti-parallel
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