Analysis of interatomic Contacts of Structural Units in PDB entry:
6NLX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NLX entry

There are 4 chains in PDB entry 6NLX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -3	GLN 333
B	MET 1	GLN 333
C	HIS -1	GLN 333
D	MET 1	SER 291

There are 59 helices in PDB entry 6NLX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	22	Right-handed alpha
Helix 2	AA2	A	37	47	Right-handed alpha
Helix 3	AA3	A	84	89	Right-handed 310
Helix 4	AA4	A	102	107	Right-handed alpha
Helix 5	AA5	A	108	113	Right-handed alpha
Helix 6	AA6	A	133	137	Right-handed 310
Helix 7	AA7	A	148	165	Right-handed alpha
Helix 8	AA8	A	193	197	Right-handed 310
Helix 9	AA9	A	198	202	Right-handed 310
Helix 10	AB1	A	209	218	Right-handed alpha
Helix 11	AB2	A	219	222	Right-handed 310
Helix 12	AB3	A	251	264	Right-handed alpha
Helix 13	AB4	A	280	285	Right-handed 310
Helix 14	AB5	A	315	331	Right-handed alpha
Helix 15	AB6	B	10	22	Right-handed alpha
Helix 16	AB7	B	37	47	Right-handed alpha
Helix 17	AB8	B	79	83	Right-handed 310
Helix 18	AB9	B	84	89	Right-handed 310
Helix 19	AC1	B	102	107	Right-handed alpha
Helix 20	AC2	B	108	111	Right-handed 310
Helix 21	AC3	B	133	137	Right-handed 310
Helix 22	AC4	B	148	165	Right-handed alpha
Helix 23	AC5	B	193	197	Right-handed 310
Helix 24	AC6	B	198	202	Right-handed 310
Helix 25	AC7	B	209	218	Right-handed alpha
Helix 26	AC8	B	219	222	Right-handed 310
Helix 27	AC9	B	251	264	Right-handed alpha
Helix 28	AD1	B	280	285	Right-handed 310
Helix 29	AD2	B	315	331	Right-handed alpha
Helix 30	AD3	C	10	21	Right-handed alpha
Helix 31	AD4	C	37	47	Right-handed alpha
Helix 32	AD5	C	79	83	Right-handed 310
Helix 33	AD6	C	84	89	Right-handed 310
Helix 34	AD7	C	102	107	Right-handed alpha
Helix 35	AD8	C	108	113	Right-handed 310
Helix 36	AD9	C	133	137	Right-handed 310
Helix 37	AE1	C	148	165	Right-handed alpha
Helix 38	AE2	C	193	197	Right-handed 310
Helix 39	AE3	C	198	202	Right-handed 310
Helix 40	AE4	C	209	218	Right-handed alpha
Helix 41	AE5	C	219	222	Right-handed 310
Helix 42	AE6	C	251	265	Right-handed alpha
Helix 43	AE7	C	280	285	Right-handed 310
Helix 44	AE8	C	315	331	Right-handed alpha
Helix 45	AE9	D	10	21	Right-handed alpha
Helix 46	AF1	D	37	47	Right-handed alpha
Helix 47	AF2	D	79	83	Right-handed 310
Helix 48	AF3	D	84	89	Right-handed 310
Helix 49	AF4	D	102	107	Right-handed alpha
Helix 50	AF5	D	108	113	Right-handed 310
Helix 51	AF6	D	133	137	Right-handed 310
Helix 52	AF7	D	148	165	Right-handed alpha
Helix 53	AF8	D	193	197	Right-handed 310
Helix 54	AF9	D	198	202	Right-handed 310
Helix 55	AG1	D	209	218	Right-handed alpha
Helix 56	AG2	D	219	222	Right-handed 310
Helix 57	AG3	D	251	265	Right-handed alpha
Helix 58	AG4	D	280	285	Right-handed 310
Helix 59	AG5	D	315	331	Right-handed alpha

There are 12 sheets in PDB entry 6NLX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	64	67	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	26	32	parallel
Strand 5	A	2	7	parallel
Strand 6	A	92	95	parallel
Strand 7	A	116	119	parallel
Strand 8	A	143	145	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	225	231	anti-parallel
Strand 3	A	167	176	parallel
Strand 4	A	238	246	anti-parallel
Strand 5	A	305	312	anti-parallel
Strand 6	A	291	294	anti-parallel
Strand 7	A	272	275	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	225	231	anti-parallel
Strand 3	A	167	176	parallel
Strand 4	A	238	246	anti-parallel
Strand 5	A	305	312	anti-parallel
Strand 6	A	299	302	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	64	67	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	26	32	parallel
Strand 5	B	2	7	parallel
Strand 6	B	92	95	parallel
Strand 7	B	116	119	parallel
Strand 8	B	143	145	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	207	first strand
Strand 2	B	225	231	anti-parallel
Strand 3	B	167	176	parallel
Strand 4	B	238	246	anti-parallel
Strand 5	B	305	312	anti-parallel
Strand 6	B	291	294	anti-parallel
Strand 7	B	272	275	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	207	first strand
Strand 2	B	225	231	anti-parallel
Strand 3	B	167	176	parallel
Strand 4	B	238	246	anti-parallel
Strand 5	B	305	312	anti-parallel
Strand 6	B	299	302	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	61	first strand
Strand 2	C	64	67	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	26	32	parallel
Strand 5	C	2	7	parallel
Strand 6	C	92	95	parallel
Strand 7	C	116	119	parallel
Strand 8	C	143	145	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	225	232	anti-parallel
Strand 3	C	167	177	parallel
Strand 4	C	238	246	anti-parallel
Strand 5	C	305	312	anti-parallel
Strand 6	C	291	294	anti-parallel
Strand 7	C	272	275	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	225	232	anti-parallel
Strand 3	C	167	177	parallel
Strand 4	C	238	246	anti-parallel
Strand 5	C	305	312	anti-parallel
Strand 6	C	299	302	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	64	67	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	26	32	parallel
Strand 5	D	2	7	parallel
Strand 6	D	92	95	parallel
Strand 7	D	116	119	parallel
Strand 8	D	143	145	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	206	first strand
Strand 2	D	225	231	anti-parallel
Strand 3	D	167	176	parallel
Strand 4	D	238	246	anti-parallel
Strand 5	D	305	312	anti-parallel
Strand 6	D	291	294	anti-parallel
Strand 7	D	272	275	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	206	first strand
Strand 2	D	225	231	anti-parallel
Strand 3	D	167	176	parallel
Strand 4	D	238	246	anti-parallel
Strand 5	D	305	312	anti-parallel
Strand 6	D	299	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NLX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NLX