Analysis of interatomic Contacts of Structural Units in PDB entry:
6NLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NLY entry

There are 4 chains in PDB entry 6NLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 811HIS 988
A
 SER 808HIS 988
C
 ARG 812GLU 987
D
 ARG 812HIS 993
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6NLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
811 833Right-handed alpha
Helix 2
AA2
B
837 878Right-handed alpha
Helix 3
AA3
B
892 907Right-handed alpha
Helix 4
AA4
B
938 950Right-handed alpha
Helix 5
AA5
B
969 985Right-handed alpha
Helix 6
AA6
A
809 833Right-handed alpha
Helix 7
AA7
A
837 878Right-handed alpha
Helix 8
AA8
A
892 907Right-handed alpha
Helix 9
AA9
A
938 950Right-handed alpha
Helix 10
AB1
A
969 985Right-handed alpha
Helix 11
AB2
C
813 834Right-handed alpha
Helix 12
AB3
C
837 878Right-handed alpha
Helix 13
AB4
C
892 907Right-handed alpha
Helix 14
AB5
C
938 950Right-handed alpha
Helix 15
AB6
C
969 986Right-handed alpha
Helix 16
AB7
D
813 834Right-handed alpha
Helix 17
AB8
D
837 878Right-handed alpha
Helix 18
AB9
D
892 907Right-handed alpha
Helix 19
AC1
D
938 950Right-handed alpha
Helix 20
AC2
D
969 992Right-handed alpha
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There are 4 sheets in PDB entry 6NLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
883 887first strand
Strand 2
B
911 918parallel
Strand 3
B
922 928anti-parallel
Strand 4
B
960 965anti-parallel
Strand 5
B
953 956anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
883 887first strand
Strand 2
A
911 917parallel
Strand 3
A
922 928anti-parallel
Strand 4
A
960 966anti-parallel
Strand 5
A
953 956anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
883 887first strand
Strand 2
C
911 917parallel
Strand 3
C
922 928anti-parallel
Strand 4
C
960 966anti-parallel
Strand 5
C
953 956anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
883 887first strand
Strand 2
D
911 917parallel
Strand 3
D
922 928anti-parallel
Strand 4
D
960 966anti-parallel
Strand 5
D
953 956anti-parallel
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