Analysis of interatomic Contacts of Structural Units in PDB entry:
6NM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NM4 entry

There are 2 chains in PDB entry 6NM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 195ALA 379
B
 GLU 196MET 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6NM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
198 202Right-handed 310
Helix 2
AA2
A
236 242Right-handed alpha
Helix 3
AA3
A
283 287Right-handed 310
Helix 4
AA4
A
314 319Right-handed 310
Helix 5
AA5
A
361 368Right-handed alpha
Helix 6
AA6
A
374 378Right-handed 310
Helix 7
AA7
B
198 202Right-handed 310
Helix 8
AA8
B
236 242Right-handed alpha
Helix 9
AA9
B
283 287Right-handed 310
Helix 10
AB1
B
314 319Right-handed 310
Helix 11
AB2
B
361 368Right-handed alpha
Helix 12
AB3
B
374 378Right-handed 310
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There are 8 sheets in PDB entry 6NM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
210 212anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
271 273parallel
Strand 3
A
338 343anti-parallel
Strand 4
A
330 335anti-parallel
Strand 5
A
352 357parallel
Strand 6
A
258 262anti-parallel
Strand 7
A
246 250anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
271 273parallel
Strand 3
A
338 343anti-parallel
Strand 4
A
330 335anti-parallel
Strand 5
A
352 357parallel
Strand 6
A
320 321parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
301 306anti-parallel
Strand 3
A
292 298anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
210 212anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
272 273parallel
Strand 3
B
338 343anti-parallel
Strand 4
B
330 335anti-parallel
Strand 5
B
352 357parallel
Strand 6
B
258 262anti-parallel
Strand 7
B
246 250anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
272 273parallel
Strand 3
B
338 343anti-parallel
Strand 4
B
330 335anti-parallel
Strand 5
B
352 357parallel
Strand 6
B
320 321parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 281first strand
Strand 2
B
301 306anti-parallel
Strand 3
B
292 298anti-parallel
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