Analysis of interatomic Contacts of Structural Units in PDB entry:
6NM6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NM6 entry

There are 8 chains in PDB entry 6NM6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 518	LEU 663
D	GLN 1	THR 110
E	SER 2	GLY 107
G	GLU 32	VAL 505
H	GLN 1	PRO 211
L	TYR 7	THR 210
U	ARG 1	SER 112
V	HIS 3	HIS 105

There are 25 helices in PDB entry 6NM6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	523	527	Right-handed 310
Helix 2	AA2	B	529	534	Right-handed alpha
Helix 3	AA3	B	536	543	Right-handed alpha
Helix 4	AA4	B	570	595	Right-handed alpha
Helix 5	AA5	B	627	635	Right-handed alpha
Helix 6	AA6	B	638	661	Right-handed alpha
Helix 7	AA7	D	28	32	Right-handed 310
Helix 8	AA8	E	79	83	Right-handed 310
Helix 9	AA9	G	70	74	Right-handed 310
Helix 10	AB1	G	98	115	Right-handed alpha
Helix 11	AB2	G	122	126	Right-handed 310
Helix 12	AB3	G	177	181	Right-handed 310
Helix 13	AB4	G	334	349	Right-handed alpha
Helix 14	AB5	G	368	373	Right-handed alpha
Helix 15	AB6	G	475	481	Right-handed alpha
Helix 16	AB7	H	28	32	Right-handed 310
Helix 17	AB8	H	83	87	Right-handed 310
Helix 18	AB9	H	154	156	Right-handed 310
Helix 19	AC1	H	185	188	Right-handed 310
Helix 20	AC2	H	199	202	Right-handed 310
Helix 21	AC3	L	79	83	Right-handed 310
Helix 22	AC4	L	122	127	Right-handed alpha
Helix 23	AC5	U	28	32	Right-handed 310
Helix 24	AC6	U	62	66	Right-handed alpha
Helix 25	AC7	U	83	87	Right-handed 310

There are 33 sheets in PDB entry 6NM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	609	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	G	494	499	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	71	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	88	94	anti-parallel
Strand 5	D	102	103	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	88	94	anti-parallel
Strand 5	D	107	108	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	102	105	parallel
Strand 3	E	84	91	anti-parallel
Strand 4	E	32	38	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	102	105	parallel
Strand 3	E	84	91	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	23	first strand
Strand 2	E	71	75	anti-parallel
Strand 3	E	62	66	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	488	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	83	86	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	53	56	parallel
Strand 3	G	216	218	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	236	239	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	176	first strand
Strand 2	G	155	162	anti-parallel
Strand 3	G	129	133	anti-parallel
Strand 4	G	189	191	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	203	first strand
Strand 2	G	432	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	302	anti-parallel
Strand 3	G	330	333	anti-parallel
Strand 4	G	414	421	anti-parallel
Strand 5	G	381	385	anti-parallel
Strand 6	G	374	378	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	302	anti-parallel
Strand 3	G	441	456	anti-parallel
Strand 4	G	466	470	anti-parallel
Strand 5	G	359	361	parallel
Strand 6	G	393	395	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	312	first strand
Strand 2	G	315	320	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	21	25	anti-parallel
Strand 3	H	77	79	anti-parallel
Strand 4	H	71	72	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	100	101	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	18	first strand
Strand 2	H	82	82	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	119	122	first strand
Strand 2	H	133	143	anti-parallel
Strand 3	H	174	183	anti-parallel
Strand 4	H	161	163	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	152	first strand
Strand 2	H	193	198	anti-parallel
Strand 3	H	203	208	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	8	14	first strand
Strand 2	L	101	107	parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	31	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	22	first strand
Strand 2	L	72	76	anti-parallel
Strand 3	L	62	64	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	177	181	anti-parallel
Strand 4	L	160	162	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	175	anti-parallel
Strand 4	L	166	167	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	145	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	201	203	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	145	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	206	207	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	3	6	first strand
Strand 2	U	18	25	anti-parallel
Strand 3	U	77	82	anti-parallel
Strand 4	U	67	70	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	12	first strand
Strand 2	U	107	111	parallel
Strand 3	U	88	95	anti-parallel
Strand 4	U	34	39	anti-parallel
Strand 5	U	45	51	anti-parallel
Strand 6	U	57	59	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	12	first strand
Strand 2	U	107	111	parallel
Strand 3	U	88	95	anti-parallel
Strand 4	U	100	103	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	4	7	first strand
Strand 2	V	19	25	anti-parallel
Strand 3	V	70	75	anti-parallel
Strand 4	V	62	67	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	10	12	first strand
Strand 2	V	103	105	parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	53	54	first strand
Strand 2	V	45	49	anti-parallel
Strand 3	V	34	38	anti-parallel
Strand 4	V	85	90	anti-parallel
Strand 5	V	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NM6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NM6