Analysis of interatomic Contacts of Structural Units in PDB entry:
6NM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NM8 entry

There are 2 chains in PDB entry 6NM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 18HIS 142
B
 ALA 18HIS 143
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 6NM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 51Right-handed 310
Helix 2
AA2
A
78 82Right-handed 310
Helix 3
AA3
A
88 93Right-handed alpha
Helix 4
AA4
A
105 109Right-handed 310
Helix 5
AA5
A
133 142Right-handed alpha
Helix 6
AA6
B
49 51Right-handed 310
Helix 7
AA7
B
78 82Right-handed 310
Helix 8
AA8
B
89 93Right-handed 310
Helix 9
AA9
B
105 109Right-handed 310
Helix 10
AB1
B
133 141Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6NM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
121 131parallel
Strand 3
A
110 118anti-parallel
Strand 4
A
53 59anti-parallel
Strand 5
A
62 68anti-parallel
Strand 6
A
71 73anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
99 101anti-parallel
Strand 3
A
85 87anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
121 131parallel
Strand 3
B
110 118anti-parallel
Strand 4
B
53 59anti-parallel
Strand 5
B
63 68anti-parallel
Strand 6
B
71 73anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
99 101anti-parallel
Strand 3
B
85 87anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il