Analysis of interatomic Contacts of Structural Units in PDB entry:
6NM9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NM9 entry

There are 6 chains in PDB entry 6NM9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 120	LYS 234
B	MET 1	LYS 1227
G	A 3	A 27
C	MET 120	LYS 234
D	MET 1	LYS 1227
E	A 3	A 27

There are114 helices in PDB entry 6NM9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	127	148	Right-handed alpha
Helix 2	AA2	A	200	204	Right-handed 310
Helix 3	AA3	A	225	231	Right-handed alpha
Helix 4	AA4	B	3	7	Right-handed 310
Helix 5	AA5	B	26	34	Right-handed alpha
Helix 6	AA6	B	37	46	Right-handed alpha
Helix 7	AA7	B	46	67	Right-handed alpha
Helix 8	AA8	B	73	82	Right-handed alpha
Helix 9	AA9	B	91	112	Right-handed alpha
Helix 10	AB1	B	121	126	Right-handed alpha
Helix 11	AB2	B	126	131	Right-handed alpha
Helix 12	AB3	B	134	142	Right-handed alpha
Helix 13	AB4	B	143	145	Right-handed 310
Helix 14	AB5	B	147	150	Right-handed 310
Helix 15	AB6	B	151	160	Right-handed alpha
Helix 16	AB7	B	170	178	Right-handed alpha
Helix 17	AB8	B	179	194	Right-handed alpha
Helix 18	AB9	B	198	208	Right-handed alpha
Helix 19	AC1	B	216	221	Right-handed alpha
Helix 20	AC2	B	222	230	Right-handed 310
Helix 21	AC3	B	231	241	Right-handed alpha
Helix 22	AC4	B	254	262	Right-handed alpha
Helix 23	AC5	B	263	266	Right-handed 310
Helix 24	AC6	B	296	308	Right-handed alpha
Helix 25	AC7	B	312	326	Right-handed alpha
Helix 26	AC8	B	327	331	Right-handed 310
Helix 27	AC9	B	341	352	Right-handed alpha
Helix 28	AD1	B	356	371	Right-handed alpha
Helix 29	AD2	B	378	392	Right-handed alpha
Helix 30	AD3	B	397	404	Right-handed alpha
Helix 31	AD4	B	409	437	Right-handed alpha
Helix 32	AD5	B	450	471	Right-handed alpha
Helix 33	AD6	B	483	498	Right-handed alpha
Helix 34	AD7	B	498	512	Right-handed alpha
Helix 35	AD8	B	538	543	Right-handed alpha
Helix 36	AD9	B	588	598	Right-handed alpha
Helix 37	AE1	B	610	619	Right-handed alpha
Helix 38	AE2	B	630	646	Right-handed alpha
Helix 39	AE3	B	666	676	Right-handed alpha
Helix 40	AE4	B	686	696	Right-handed alpha
Helix 41	AE5	B	718	727	Right-handed alpha
Helix 42	AE6	B	786	790	Right-handed 310
Helix 43	AE7	B	811	823	Right-handed alpha
Helix 44	AE8	B	872	884	Right-handed alpha
Helix 45	AE9	B	893	901	Right-handed alpha
Helix 46	AF1	B	907	913	Right-handed alpha
Helix 47	AF2	B	913	919	Right-handed alpha
Helix 48	AF3	B	927	930	Right-handed 310
Helix 49	AF4	B	939	955	Right-handed alpha
Helix 50	AF5	B	982	986	Right-handed 310
Helix 51	AF6	B	1020	1030	Right-handed alpha
Helix 52	AF7	B	1091	1101	Right-handed alpha
Helix 53	AF8	B	1111	1116	Right-handed alpha
Helix 54	AF9	B	1120	1135	Right-handed alpha
Helix 55	AG1	B	1164	1169	Right-handed alpha
Helix 56	AG2	B	1178	1199	Right-handed alpha
Helix 57	AG3	B	1214	1225	Right-handed alpha
Helix 58	AG4	C	127	148	Right-handed alpha
Helix 59	AG5	C	200	204	Right-handed 310
Helix 60	AG6	C	225	231	Right-handed alpha
Helix 61	AG7	D	3	7	Right-handed 310
Helix 62	AG8	D	26	34	Right-handed alpha
Helix 63	AG9	D	37	46	Right-handed alpha
Helix 64	AH1	D	46	67	Right-handed alpha
Helix 65	AH2	D	73	82	Right-handed alpha
Helix 66	AH3	D	91	112	Right-handed alpha
Helix 67	AH4	D	121	126	Right-handed alpha
Helix 68	AH5	D	126	131	Right-handed alpha
Helix 69	AH6	D	134	142	Right-handed alpha
Helix 70	AH7	D	143	145	Right-handed 310
Helix 71	AH8	D	147	150	Right-handed 310
Helix 72	AH9	D	151	160	Right-handed alpha
Helix 73	AI1	D	170	178	Right-handed alpha
Helix 74	AI2	D	179	194	Right-handed alpha
Helix 75	AI3	D	198	208	Right-handed alpha
Helix 76	AI4	D	216	221	Right-handed alpha
Helix 77	AI5	D	222	230	Right-handed 310
Helix 78	AI6	D	231	241	Right-handed alpha
Helix 79	AI7	D	254	262	Right-handed alpha
Helix 80	AI8	D	263	266	Right-handed 310
Helix 81	AI9	D	296	308	Right-handed alpha
Helix 82	AJ1	D	312	326	Right-handed alpha
Helix 83	AJ2	D	327	331	Right-handed 310
Helix 84	AJ3	D	341	352	Right-handed alpha
Helix 85	AJ4	D	356	371	Right-handed alpha
Helix 86	AJ5	D	378	392	Right-handed alpha
Helix 87	AJ6	D	397	404	Right-handed alpha
Helix 88	AJ7	D	409	437	Right-handed alpha
Helix 89	AJ8	D	450	471	Right-handed alpha
Helix 90	AJ9	D	483	498	Right-handed alpha
Helix 91	AK1	D	498	512	Right-handed alpha
Helix 92	AK2	D	538	543	Right-handed alpha
Helix 93	AK3	D	588	598	Right-handed alpha
Helix 94	AK4	D	610	619	Right-handed alpha
Helix 95	AK5	D	630	646	Right-handed alpha
Helix 96	AK6	D	666	676	Right-handed alpha
Helix 97	AK7	D	686	696	Right-handed alpha
Helix 98	AK8	D	718	727	Right-handed alpha
Helix 99	AK9	D	786	790	Right-handed 310
Helix 100	AL1	D	811	823	Right-handed alpha
Helix 101	AL2	D	872	884	Right-handed alpha
Helix 102	AL3	D	893	901	Right-handed alpha
Helix 103	AL4	D	907	913	Right-handed alpha
Helix 104	AL5	D	913	919	Right-handed alpha
Helix 105	AL6	D	927	930	Right-handed 310
Helix 106	AL7	D	939	955	Right-handed alpha
Helix 107	AL8	D	982	986	Right-handed 310
Helix 108	AL9	D	1020	1030	Right-handed alpha
Helix 109	AM1	D	1091	1101	Right-handed alpha
Helix 110	AM2	D	1111	1116	Right-handed alpha
Helix 111	AM3	D	1120	1135	Right-handed alpha
Helix 112	AM4	D	1164	1169	Right-handed alpha
Helix 113	AM5	D	1178	1199	Right-handed alpha
Helix 114	AM6	D	1214	1225	Right-handed alpha

There are 24 sheets in PDB entry 6NM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	180	181	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	522	first strand
Strand 2	B	743	747	anti-parallel
Strand 3	B	793	799	anti-parallel
Strand 4	B	16	23	anti-parallel
Strand 5	B	700	705	anti-parallel
Strand 6	B	552	557	anti-parallel
Strand 7	B	545	549	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	394	396	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	737	first strand
Strand 2	B	801	802	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	757	759	first strand
Strand 2	B	783	785	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	765	766	first strand
Strand 2	B	776	777	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	850	855	first strand
Strand 2	B	840	844	anti-parallel
Strand 3	B	828	832	anti-parallel
Strand 4	B	921	925	parallel
Strand 5	B	993	996	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	858	863	first strand
Strand 2	B	866	871	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1033	1037	first strand
Strand 2	B	1042	1048	anti-parallel
Strand 3	B	1062	1065	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1070	1072	first strand
Strand 2	B	1088	1090	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1139	1140	first strand
Strand 2	B	1148	1149	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1151	1152	first strand
Strand 2	B	1162	1163	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	180	181	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	522	first strand
Strand 2	D	743	747	anti-parallel
Strand 3	D	793	799	anti-parallel
Strand 4	D	16	23	anti-parallel
Strand 5	D	700	705	anti-parallel
Strand 6	D	552	557	anti-parallel
Strand 7	D	545	549	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	339	first strand
Strand 2	D	394	396	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	736	737	first strand
Strand 2	D	801	802	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	757	759	first strand
Strand 2	D	783	785	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	765	766	first strand
Strand 2	D	776	777	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	850	855	first strand
Strand 2	D	840	844	anti-parallel
Strand 3	D	828	832	anti-parallel
Strand 4	D	921	925	parallel
Strand 5	D	993	996	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	858	863	first strand
Strand 2	D	866	871	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1033	1037	first strand
Strand 2	D	1042	1048	anti-parallel
Strand 3	D	1062	1065	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1070	1072	first strand
Strand 2	D	1088	1090	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1139	1140	first strand
Strand 2	D	1148	1149	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1151	1152	first strand
Strand 2	D	1162	1163	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NM9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NM9