Analysis of interatomic Contacts of Structural Units in PDB entry:
6NMA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NMA entry

There are 4 chains in PDB entry 6NMA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 120	LYS 234
B	MET 1	LYS 1227
G	A 3	A 27
C	MET 120	HIS 233

There are 61 helices in PDB entry 6NMA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	120	125	Right-handed alpha
Helix 2	AA2	A	126	129	Right-handed 310
Helix 3	AA3	A	130	148	Right-handed alpha
Helix 4	AA4	A	151	155	Right-handed 310
Helix 5	AA5	A	200	204	Right-handed 310
Helix 6	AA6	A	225	231	Right-handed alpha
Helix 7	AA7	B	26	35	Right-handed alpha
Helix 8	AA8	B	37	66	Right-handed alpha
Helix 9	AA9	B	73	82	Right-handed alpha
Helix 10	AB1	B	90	104	Right-handed alpha
Helix 11	AB2	B	106	112	Right-handed alpha
Helix 12	AB3	B	121	126	Right-handed alpha
Helix 13	AB4	B	126	131	Right-handed alpha
Helix 14	AB5	B	135	144	Right-handed alpha
Helix 15	AB6	B	147	150	Right-handed 310
Helix 16	AB7	B	151	158	Right-handed alpha
Helix 17	AB8	B	173	178	Right-handed alpha
Helix 18	AB9	B	179	194	Right-handed alpha
Helix 19	AC1	B	198	209	Right-handed alpha
Helix 20	AC2	B	223	227	Right-handed 310
Helix 21	AC3	B	230	242	Right-handed alpha
Helix 22	AC4	B	254	262	Right-handed alpha
Helix 23	AC5	B	263	266	Right-handed 310
Helix 24	AC6	B	296	309	Right-handed alpha
Helix 25	AC7	B	312	327	Right-handed alpha
Helix 26	AC8	B	341	351	Right-handed alpha
Helix 27	AC9	B	356	370	Right-handed alpha
Helix 28	AD1	B	378	392	Right-handed alpha
Helix 29	AD2	B	397	403	Right-handed alpha
Helix 30	AD3	B	410	431	Right-handed alpha
Helix 31	AD4	B	432	437	Right-handed alpha
Helix 32	AD5	B	452	471	Right-handed alpha
Helix 33	AD6	B	483	498	Right-handed alpha
Helix 34	AD7	B	499	512	Right-handed alpha
Helix 35	AD8	B	538	543	Right-handed alpha
Helix 36	AD9	B	588	598	Right-handed alpha
Helix 37	AE1	B	610	619	Right-handed alpha
Helix 38	AE2	B	629	644	Right-handed alpha
Helix 39	AE3	B	646	651	Right-handed alpha
Helix 40	AE4	B	666	677	Right-handed alpha
Helix 41	AE5	B	687	696	Right-handed alpha
Helix 42	AE6	B	718	727	Right-handed alpha
Helix 43	AE7	B	786	790	Right-handed 310
Helix 44	AE8	B	811	822	Right-handed alpha
Helix 45	AE9	B	873	885	Right-handed alpha
Helix 46	AF1	B	894	900	Right-handed alpha
Helix 47	AF2	B	907	919	Right-handed alpha
Helix 48	AF3	B	927	930	Right-handed 310
Helix 49	AF4	B	939	948	Right-handed alpha
Helix 50	AF5	B	950	955	Right-handed alpha
Helix 51	AF6	B	1020	1031	Right-handed alpha
Helix 52	AF7	B	1091	1102	Right-handed alpha
Helix 53	AF8	B	1111	1116	Right-handed alpha
Helix 54	AF9	B	1120	1135	Right-handed alpha
Helix 55	AG1	B	1163	1167	Right-handed 310
Helix 56	AG2	B	1180	1199	Right-handed alpha
Helix 57	AG3	B	1205	1209	Right-handed 310
Helix 58	AG4	B	1214	1225	Right-handed alpha
Helix 59	AG5	C	123	149	Right-handed alpha
Helix 60	AG6	C	151	155	Right-handed 310
Helix 61	AG7	C	225	231	Right-handed alpha

There are 12 sheets in PDB entry 6NMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	209	212	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	206	207	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	522	first strand
Strand 2	B	743	747	anti-parallel
Strand 3	B	793	802	anti-parallel
Strand 4	B	13	23	anti-parallel
Strand 5	B	702	705	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	522	first strand
Strand 2	B	743	747	anti-parallel
Strand 3	B	793	802	anti-parallel
Strand 4	B	736	737	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	394	396	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	556	first strand
Strand 2	B	545	549	anti-parallel
Strand 3	B	577	582	anti-parallel
Strand 4	B	681	686	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	758	759	first strand
Strand 2	B	783	784	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	850	855	first strand
Strand 2	B	840	844	anti-parallel
Strand 3	B	828	832	anti-parallel
Strand 4	B	921	925	parallel
Strand 5	B	993	996	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	858	863	first strand
Strand 2	B	866	871	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1033	1037	first strand
Strand 2	B	1042	1048	anti-parallel
Strand 3	B	1062	1065	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1070	1073	first strand
Strand 2	B	1087	1090	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	194	198	anti-parallel
Strand 3	C	180	187	anti-parallel
Strand 4	C	157	158	anti-parallel
Strand 5	C	212	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NMA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NMA