Analysis of interatomic Contacts of Structural Units in PDB entry:
6NMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NMD entry

There are 3 chains in PDB entry 6NMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 1227
G
 A 3 A 27
B
 SER 2CYS 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 6NMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
37 66Right-handed alpha
Helix 3
AA3
A
67 69Right-handed 310
Helix 4
AA4
A
73 83Right-handed alpha
Helix 5
AA5
A
89 111Right-handed alpha
Helix 6
AA6
A
115 119Right-handed 310
Helix 7
AA7
A
120 124Right-handed 310
Helix 8
AA8
A
136 142Right-handed alpha
Helix 9
AA9
A
143 145Right-handed 310
Helix 10
AB1
A
148 154Right-handed 310
Helix 11
AB2
A
156 161Right-handed alpha
Helix 12
AB3
A
170 178Right-handed alpha
Helix 13
AB4
A
178 190Right-handed alpha
Helix 14
AB5
A
191 197Right-handed 310
Helix 15
AB6
A
198 203Right-handed alpha
Helix 16
AB7
A
205 210Right-handed alpha
Helix 17
AB8
A
216 221Right-handed alpha
Helix 18
AB9
A
224 229Right-handed alpha
Helix 19
AC1
A
230 243Right-handed alpha
Helix 20
AC2
A
254 261Right-handed alpha
Helix 21
AC3
A
262 266Right-handed 310
Helix 22
AC4
A
296 309Right-handed alpha
Helix 23
AC5
A
312 327Right-handed alpha
Helix 24
AC6
A
328 331Right-handed 310
Helix 25
AC7
A
343 352Right-handed alpha
Helix 26
AC8
A
357 371Right-handed alpha
Helix 27
AC9
A
378 390Right-handed alpha
Helix 28
AD1
A
396 404Right-handed alpha
Helix 29
AD2
A
409 433Right-handed alpha
Helix 30
AD3
A
450 471Right-handed alpha
Helix 31
AD4
A
483 498Right-handed alpha
Helix 32
AD5
A
500 512Right-handed alpha
Helix 33
AD6
A
538 543Right-handed alpha
Helix 34
AD7
A
560 563Right-handed 310
Helix 35
AD8
A
592 597Right-handed alpha
Helix 36
AD9
A
609 619Right-handed alpha
Helix 37
AE1
A
628 646Right-handed alpha
Helix 38
AE2
A
646 652Right-handed alpha
Helix 39
AE3
A
659 663Right-handed 310
Helix 40
AE4
A
665 677Right-handed alpha
Helix 41
AE5
A
687 697Right-handed alpha
Helix 42
AE6
A
718 727Right-handed alpha
Helix 43
AE7
A
786 790Right-handed 310
Helix 44
AE8
A
811 823Right-handed alpha
Helix 45
AE9
A
872 886Right-handed alpha
Helix 46
AF1
A
889 919Right-handed alpha
Helix 47
AF2
A
939 952Right-handed alpha
Helix 48
AF3
A
953 956Right-handed 310
Helix 49
AF4
A
1020 1030Right-handed alpha
Helix 50
AF5
A
1091 1102Right-handed alpha
Helix 51
AF6
A
1111 1116Right-handed alpha
Helix 52
AF7
A
1120 1136Right-handed alpha
Helix 53
AF8
A
1163 1169Right-handed alpha
Helix 54
AF9
A
1178 1199Right-handed alpha
Helix 55
AG1
A
1214 1225Right-handed alpha
Helix 56
AG2
B
3 20Right-handed alpha
Helix 57
AG3
B
29 45Right-handed alpha
Helix 58
AG4
B
48 52Right-handed 310
Helix 59
AG5
B
67 76Right-handed alpha
Helix 60
AG6
B
105 112Right-handed alpha
Helix 61
AG7
B
124 162Right-handed alpha
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There are 13 sheets in PDB entry 6NMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 580first strand
Strand 2
A
545 548anti-parallel
Strand 3
A
554 558anti-parallel
Strand 4
A
699 705anti-parallel
Strand 5
A
20 23anti-parallel
Strand 6
A
794 795anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
394 395anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
745 746anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 585first strand
Strand 2
A
678 679anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 738first strand
Strand 2
A
800 801anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 759first strand
Strand 2
A
783 784anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 765first strand
Strand 2
A
777 778anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
828 833first strand
Strand 2
A
839 844anti-parallel
Strand 3
A
850 855anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 862first strand
Strand 2
A
867 871anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
922 925first strand
Strand 2
A
993 996parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1047 1048first strand
Strand 2
A
1062 1063anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1072 1073first strand
Strand 2
A
1087 1088anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1138 1140first strand
Strand 2
A
1148 1150anti-parallel
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