Analysis of interatomic Contacts of Structural Units in PDB entry:
6NME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NME entry

There are 2 chains in PDB entry 6NME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 1227
G
 A 3 A 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6NME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
37 66Right-handed alpha
Helix 3
AA3
A
73 83Right-handed alpha
Helix 4
AA4
A
91 111Right-handed alpha
Helix 5
AA5
A
120 126Right-handed alpha
Helix 6
AA6
A
137 144Right-handed alpha
Helix 7
AA7
A
148 159Right-handed alpha
Helix 8
AA8
A
170 177Right-handed alpha
Helix 9
AA9
A
178 194Right-handed alpha
Helix 10
AB1
A
204 211Right-handed alpha
Helix 11
AB2
A
215 220Right-handed alpha
Helix 12
AB3
A
221 225Right-handed 310
Helix 13
AB4
A
230 242Right-handed alpha
Helix 14
AB5
A
254 262Right-handed alpha
Helix 15
AB6
A
263 266Right-handed 310
Helix 16
AB7
A
296 308Right-handed alpha
Helix 17
AB8
A
312 325Right-handed alpha
Helix 18
AB9
A
327 331Right-handed 310
Helix 19
AC1
A
342 352Right-handed alpha
Helix 20
AC2
A
356 371Right-handed alpha
Helix 21
AC3
A
378 392Right-handed alpha
Helix 22
AC4
A
397 404Right-handed alpha
Helix 23
AC5
A
409 433Right-handed alpha
Helix 24
AC6
A
434 437Right-handed 310
Helix 25
AC7
A
449 471Right-handed alpha
Helix 26
AC8
A
483 497Right-handed alpha
Helix 27
AC9
A
499 513Right-handed alpha
Helix 28
AD1
A
538 543Right-handed alpha
Helix 29
AD2
A
564 568Right-handed 310
Helix 30
AD3
A
588 598Right-handed alpha
Helix 31
AD4
A
609 619Right-handed alpha
Helix 32
AD5
A
628 646Right-handed alpha
Helix 33
AD6
A
646 651Right-handed alpha
Helix 34
AD7
A
665 676Right-handed alpha
Helix 35
AD8
A
687 696Right-handed alpha
Helix 36
AD9
A
718 726Right-handed alpha
Helix 37
AE1
A
752 756Right-handed 310
Helix 38
AE2
A
786 790Right-handed 310
Helix 39
AE3
A
811 822Right-handed alpha
Helix 40
AE4
A
872 885Right-handed alpha
Helix 41
AE5
A
889 919Right-handed alpha
Helix 42
AE6
A
939 956Right-handed alpha
Helix 43
AE7
A
1020 1031Right-handed alpha
Helix 44
AE8
A
1048 1052Right-handed 310
Helix 45
AE9
A
1091 1102Right-handed alpha
Helix 46
AF1
A
1111 1117Right-handed alpha
Helix 47
AF2
A
1120 1136Right-handed alpha
Helix 48
AF3
A
1163 1167Right-handed 310
Helix 49
AF4
A
1178 1199Right-handed alpha
Helix 50
AF5
A
1202 1206Right-handed 310
Helix 51
AF6
A
1214 1225Right-handed alpha
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There are 9 sheets in PDB entry 6NME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 684first strand
Strand 2
A
579 582anti-parallel
Strand 3
A
544 549anti-parallel
Strand 4
A
552 558anti-parallel
Strand 5
A
699 705anti-parallel
Strand 6
A
13 23anti-parallel
Strand 7
A
793 802anti-parallel
Strand 8
A
736 738anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 684first strand
Strand 2
A
579 582anti-parallel
Strand 3
A
544 549anti-parallel
Strand 4
A
552 558anti-parallel
Strand 5
A
699 705anti-parallel
Strand 6
A
13 23anti-parallel
Strand 7
A
793 802anti-parallel
Strand 8
A
743 747anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
394 396anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
763 766first strand
Strand 2
A
776 779anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
850 855first strand
Strand 2
A
839 844anti-parallel
Strand 3
A
828 833anti-parallel
Strand 4
A
921 925parallel
Strand 5
A
993 996parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 861first strand
Strand 2
A
868 871anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1037first strand
Strand 2
A
1042 1046anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1070 1073first strand
Strand 2
A
1087 1090anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1138 1140first strand
Strand 2
A
1148 1150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il