Analysis of interatomic Contacts of Structural Units in PDB entry:
6NMI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NMI entry

There are 8 chains in PDB entry 6NMI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 34	ALA 730
B	MET 1	LEU 760
C	ALA 107	UNK 547
D	ARG 7	GLN 458
E	UNK 16	HIS 387
F	LEU 8	SER 292
G	VAL 2	SER 67
H	MET 1	MET 210

There are128 helices in PDB entry 6NMI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	42	Right-handed alpha
Helix 2	AA2	A	92	104	Right-handed alpha
Helix 3	AA3	A	119	130	Right-handed alpha
Helix 4	AA4	A	132	142	Right-handed alpha
Helix 5	AA5	A	149	161	Right-handed alpha
Helix 6	AA6	A	181	190	Right-handed alpha
Helix 7	AA7	A	191	198	Right-handed alpha
Helix 8	AA8	A	249	262	Right-handed alpha
Helix 9	AA9	A	273	275	Right-handed 310
Helix 10	AB1	A	276	287	Right-handed alpha
Helix 11	AB2	A	317	328	Right-handed alpha
Helix 12	AB3	A	345	358	Right-handed alpha
Helix 13	AB4	A	367	380	Right-handed alpha
Helix 14	AB5	A	420	431	Right-handed alpha
Helix 15	AB6	A	443	446	Right-handed 310
Helix 16	AB7	A	447	459	Right-handed alpha
Helix 17	AB8	A	479	484	Right-handed 310
Helix 18	AB9	A	492	496	Right-handed 310
Helix 19	AC1	A	515	525	Right-handed alpha
Helix 20	AC2	A	529	534	Right-handed alpha
Helix 21	AC3	A	537	553	Right-handed alpha
Helix 22	AC4	A	564	576	Right-handed alpha
Helix 23	AC5	A	585	598	Right-handed alpha
Helix 24	AC6	A	609	612	Right-handed 310
Helix 25	AC7	A	632	644	Right-handed alpha
Helix 26	AC8	A	668	684	Right-handed alpha
Helix 27	AC9	A	706	718	Right-handed alpha
Helix 28	AD1	B	18	34	Right-handed alpha
Helix 29	AD2	B	47	63	Right-handed alpha
Helix 30	AD3	B	76	98	Right-handed alpha
Helix 31	AD4	B	126	138	Right-handed alpha
Helix 32	AD5	B	141	148	Right-handed alpha
Helix 33	AD6	B	156	164	Right-handed alpha
Helix 34	AD7	B	176	188	Right-handed alpha
Helix 35	AD8	B	190	198	Right-handed alpha
Helix 36	AD9	B	222	227	Right-handed alpha
Helix 37	AE1	B	238	248	Right-handed alpha
Helix 38	AE2	B	253	277	Right-handed alpha
Helix 39	AE3	B	278	290	Right-handed alpha
Helix 40	AE4	B	325	345	Right-handed alpha
Helix 41	AE5	B	353	365	Right-handed alpha
Helix 42	AE6	B	369	374	Right-handed alpha
Helix 43	AE7	B	374	386	Right-handed alpha
Helix 44	AE8	B	390	393	Right-handed 310
Helix 45	AE9	B	394	408	Right-handed alpha
Helix 46	AF1	B	440	451	Right-handed alpha
Helix 47	AF2	B	467	472	Right-handed alpha
Helix 48	AF3	B	513	531	Right-handed alpha
Helix 49	AF4	B	541	551	Right-handed alpha
Helix 50	AF5	B	557	565	Right-handed alpha
Helix 51	AF6	B	575	588	Right-handed alpha
Helix 52	AF7	B	602	606	Right-handed 310
Helix 53	AF8	B	630	643	Right-handed alpha
Helix 54	AF9	B	647	665	Right-handed alpha
Helix 55	AG1	B	681	686	Right-handed 310
Helix 56	AG2	B	689	693	Right-handed 310
Helix 57	AG3	B	694	699	Right-handed alpha
Helix 58	AG4	B	709	724	Right-handed alpha
Helix 59	AG5	B	729	733	Right-handed 310
Helix 60	AG6	B	746	756	Right-handed alpha
Helix 61	AG7	C	108	121	Right-handed alpha
Helix 62	AG8	C	121	132	Right-handed alpha
Helix 63	AG9	C	138	145	Right-handed alpha
Helix 64	AH1	C	189	200	Right-handed alpha
Helix 65	AH2	C	200	210	Right-handed alpha
Helix 66	AH3	C	216	223	Right-handed alpha
Helix 67	AH4	C	240	256	Right-handed alpha
Helix 68	AH5	C	295	318	Right-handed alpha
Helix 69	AH6	C	347	359	Right-handed alpha
Helix 70	AH7	C	379	384	Right-handed alpha
Helix 71	AH8	C	397	411	Right-handed alpha
Helix 72	AH9	C	423	435	Right-handed alpha
Helix 73	AI1	C	454	480	Right-handed alpha
Helix 74	AI2	C	485	515	Right-handed alpha
Helix 75	AI3	C	522	546	Right-handed alpha
Helix 76	AI4	D	19	24	Right-handed alpha
Helix 77	AI5	D	27	35	Right-handed alpha
Helix 78	AI6	D	37	46	Right-handed alpha
Helix 79	AI7	D	49	60	Right-handed alpha
Helix 80	AI8	D	67	73	Right-handed alpha
Helix 81	AI9	D	76	80	Right-handed 310
Helix 82	AJ1	D	83	93	Right-handed alpha
Helix 83	AJ2	D	111	123	Right-handed alpha
Helix 84	AJ3	D	144	165	Right-handed alpha
Helix 85	AJ4	D	174	182	Right-handed alpha
Helix 86	AJ5	D	197	205	Right-handed alpha
Helix 87	AJ6	D	207	221	Right-handed alpha
Helix 88	AJ7	D	229	241	Right-handed alpha
Helix 89	AJ8	D	255	269	Right-handed alpha
Helix 90	AJ9	D	284	289	Right-handed alpha
Helix 91	AK1	D	321	332	Right-handed alpha
Helix 92	AK2	D	347	357	Right-handed alpha
Helix 93	AK3	D	362	371	Right-handed alpha
Helix 94	AK4	D	384	399	Right-handed alpha
Helix 95	AK5	D	415	428	Right-handed alpha
Helix 96	AK6	D	447	456	Right-handed alpha
Helix 97	AK7	E	17	22	Right-handed 310
Helix 98	AK8	E	29	42	Right-handed alpha
Helix 99	AK9	E	69	73	Right-handed 310
Helix 100	AL1	E	79	99	Right-handed alpha
Helix 101	AL2	E	123	135	Right-handed alpha
Helix 102	AL3	E	144	156	Right-handed alpha
Helix 103	AL4	E	183	192	Right-handed alpha
Helix 104	AL5	E	205	216	Right-handed alpha
Helix 105	AL6	E	224	235	Right-handed alpha
Helix 106	AL7	E	318	322	Right-handed 310
Helix 107	AL8	E	368	378	Right-handed alpha
Helix 108	AL9	E	382	387	Right-handed alpha
Helix 109	AM1	F	18	28	Right-handed alpha
Helix 110	AM2	F	33	52	Right-handed alpha
Helix 111	AM3	F	101	120	Right-handed alpha
Helix 112	AM4	F	133	150	Right-handed alpha
Helix 113	AM5	F	170	172	Right-handed 310
Helix 114	AM6	F	173	187	Right-handed alpha
Helix 115	AM7	F	200	210	Right-handed alpha
Helix 116	AM8	F	219	221	Right-handed 310
Helix 117	AM9	F	222	231	Right-handed alpha
Helix 118	AN1	F	234	239	Right-handed alpha
Helix 119	AN2	G	13	27	Right-handed alpha
Helix 120	AN3	G	46	48	Right-handed 310
Helix 121	AN4	G	49	65	Right-handed alpha
Helix 122	AN5	H	11	16	Right-handed alpha
Helix 123	AN6	H	31	40	Right-handed alpha
Helix 124	AN7	H	65	80	Right-handed alpha
Helix 125	AN8	H	91	112	Right-handed alpha
Helix 126	AN9	H	113	130	Right-handed alpha
Helix 127	AO1	H	131	189	Right-handed alpha
Helix 128	AO2	H	193	210	Right-handed alpha

There are 21 sheets in PDB entry 6NMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	D	333	337	parallel
Strand 3	D	342	345	anti-parallel
Strand 4	D	314	317	anti-parallel
Strand 5	D	307	310	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	83	87	anti-parallel
Strand 3	A	113	117	anti-parallel
Strand 4	A	105	108	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	272	first strand
Strand 2	A	174	179	anti-parallel
Strand 3	A	166	171	anti-parallel
Strand 4	A	291	295	parallel
Strand 5	A	333	334	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	409	first strand
Strand 2	A	361	365	parallel
Strand 3	A	437	441	parallel
Strand 4	A	463	467	parallel
Strand 5	A	336	339	parallel
Strand 6	A	487	489	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	580	first strand
Strand 2	A	604	607	parallel
Strand 3	A	558	561	parallel
Strand 4	A	622	625	parallel
Strand 5	A	657	664	parallel
Strand 6	A	505	512	parallel
Strand 7	A	689	690	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	9	11	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	456	457	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	108	first strand
Strand 2	B	204	207	parallel
Strand 3	B	69	73	parallel
Strand 4	B	229	233	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	252	first strand
Strand 2	B	432	437	anti-parallel
Strand 3	B	414	419	anti-parallel
Strand 4	B	350	352	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	481	first strand
Strand 2	B	757	759	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	494	first strand
Strand 2	B	675	680	parallel
Strand 3	B	617	621	parallel
Strand 4	B	535	539	parallel
Strand 5	B	594	599	parallel
Strand 6	B	566	569	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	100	first strand
Strand 2	D	106	110	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	281	283	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	405	first strand
Strand 2	G	8	11	anti-parallel
Strand 3	G	43	45	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	410	first strand
Strand 2	D	440	443	anti-parallel
Strand 3	D	431	433	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	121	first strand
Strand 2	E	104	110	anti-parallel
Strand 3	E	61	66	parallel
Strand 4	E	166	171	parallel
Strand 5	E	195	200	parallel
Strand 6	E	219	221	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	312	first strand
Strand 2	E	249	253	parallel
Strand 3	F	264	268	anti-parallel
Strand 4	F	274	275	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	258	first strand
Strand 2	E	288	289	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	334	first strand
Strand 2	E	357	359	anti-parallel
Strand 3	E	366	367	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	71	first strand
Strand 2	F	56	62	anti-parallel
Strand 3	F	10	16	parallel
Strand 4	F	159	165	parallel
Strand 5	F	190	195	parallel
Strand 6	F	213	216	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	23	first strand
Strand 2	H	59	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NMI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NMI