Analysis of interatomic Contacts of Structural Units in PDB entry:
6NMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NMJ entry

There are 2 chains in PDB entry 6NMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0MET 425
B
 GLY 0GLY 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 53 helices in PDB entry 6NMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 13Right-handed alpha
Helix 2
AA2
A
14 29Right-handed alpha
Helix 3
AA3
A
31 35Right-handed 310
Helix 4
AA4
A
36 38Right-handed 310
Helix 5
AA5
A
39 57Right-handed alpha
Helix 6
AA6
A
62 74Right-handed alpha
Helix 7
AA7
A
76 81Right-handed alpha
Helix 8
AA8
A
82 84Right-handed 310
Helix 9
AA9
A
85 96Right-handed alpha
Helix 10
AB1
A
110 128Right-handed alpha
Helix 11
AB2
A
128 138Right-handed alpha
Helix 12
AB3
A
140 150Right-handed alpha
Helix 13
AB4
A
157 175Right-handed alpha
Helix 14
AB5
A
175 185Right-handed alpha
Helix 15
AB6
A
187 201Right-handed alpha
Helix 16
AB7
A
213 232Right-handed alpha
Helix 17
AB8
A
240 260Right-handed alpha
Helix 18
AB9
A
266 279Right-handed alpha
Helix 19
AC1
A
280 281Right-handed 310
Helix 20
AC2
A
282 291Right-handed 310
Helix 21
AC3
A
306 322Right-handed alpha
Helix 22
AC4
A
326 329Right-handed 310
Helix 23
AC5
A
330 344Right-handed alpha
Helix 24
AC6
A
344 356Right-handed alpha
Helix 25
AC7
A
371 380Right-handed alpha
Helix 26
AC8
A
384 399Right-handed alpha
Helix 27
AC9
A
402 411Right-handed alpha
Helix 28
AD1
A
411 416Right-handed alpha
Helix 29
AD2
B
2 13Right-handed alpha
Helix 30
AD3
B
14 30Right-handed alpha
Helix 31
AD4
B
36 38Right-handed 310
Helix 32
AD5
B
39 56Right-handed alpha
Helix 33
AD6
B
62 74Right-handed alpha
Helix 34
AD7
B
79 84Right-handed 310
Helix 35
AD8
B
85 96Right-handed alpha
Helix 36
AD9
B
110 128Right-handed alpha
Helix 37
AE1
B
128 138Right-handed alpha
Helix 38
AE2
B
140 149Right-handed alpha
Helix 39
AE3
B
157 175Right-handed alpha
Helix 40
AE4
B
175 185Right-handed alpha
Helix 41
AE5
B
187 201Right-handed alpha
Helix 42
AE6
B
213 232Right-handed alpha
Helix 43
AE7
B
240 260Right-handed alpha
Helix 44
AE8
B
266 279Right-handed alpha
Helix 45
AE9
B
280 281Right-handed 310
Helix 46
AF1
B
282 291Right-handed 310
Helix 47
AF2
B
306 320Right-handed alpha
Helix 48
AF3
B
326 329Right-handed 310
Helix 49
AF4
B
330 344Right-handed alpha
Helix 50
AF5
B
344 356Right-handed alpha
Helix 51
AF6
B
371 382Right-handed alpha
Helix 52
AF7
B
386 399Right-handed alpha
Helix 53
AF8
B
402 411Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6NMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
261 262parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
304 305anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 301first strand
Strand 2
B
304 305anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il