Analysis of interatomic Contacts of Structural Units in PDB entry:
6NMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NMM entry

There are 4 chains in PDB entry 6NMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	PHE 253
B	ASN 2	PHE 253
C	ASN 2	PHE 253
D	ASN 2	PHE 253

There are 56 helices in PDB entry 6NMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	28	Right-handed alpha
Helix 2	AA2	A	38	42	Right-handed alpha
Helix 3	AA3	A	82	90	Right-handed alpha
Helix 4	AA4	A	95	100	Right-handed alpha
Helix 5	AA5	A	101	104	Right-handed 310
Helix 6	AA6	A	114	125	Right-handed alpha
Helix 7	AA7	A	127	142	Right-handed alpha
Helix 8	AA8	A	142	157	Right-handed alpha
Helix 9	AA9	A	158	160	Right-handed 310
Helix 10	AB1	A	161	182	Right-handed alpha
Helix 11	AB2	A	187	189	Right-handed 310
Helix 12	AB3	A	190	196	Right-handed alpha
Helix 13	AB4	A	204	215	Right-handed alpha
Helix 14	AB5	A	219	242	Right-handed alpha
Helix 15	AB6	B	8	28	Right-handed alpha
Helix 16	AB7	B	38	42	Right-handed alpha
Helix 17	AB8	B	82	89	Right-handed alpha
Helix 18	AB9	B	95	100	Right-handed alpha
Helix 19	AC1	B	101	104	Right-handed 310
Helix 20	AC2	B	114	124	Right-handed alpha
Helix 21	AC3	B	127	142	Right-handed alpha
Helix 22	AC4	B	142	157	Right-handed alpha
Helix 23	AC5	B	158	160	Right-handed 310
Helix 24	AC6	B	161	182	Right-handed alpha
Helix 25	AC7	B	187	189	Right-handed 310
Helix 26	AC8	B	190	196	Right-handed alpha
Helix 27	AC9	B	204	215	Right-handed alpha
Helix 28	AD1	B	219	242	Right-handed alpha
Helix 29	AD2	C	8	28	Right-handed alpha
Helix 30	AD3	C	38	42	Right-handed alpha
Helix 31	AD4	C	82	89	Right-handed alpha
Helix 32	AD5	C	95	100	Right-handed alpha
Helix 33	AD6	C	101	104	Right-handed 310
Helix 34	AD7	C	114	124	Right-handed alpha
Helix 35	AD8	C	127	142	Right-handed alpha
Helix 36	AD9	C	142	157	Right-handed alpha
Helix 37	AE1	C	158	160	Right-handed 310
Helix 38	AE2	C	161	182	Right-handed alpha
Helix 39	AE3	C	187	189	Right-handed 310
Helix 40	AE4	C	190	196	Right-handed alpha
Helix 41	AE5	C	204	215	Right-handed alpha
Helix 42	AE6	C	219	241	Right-handed alpha
Helix 43	AE7	D	8	28	Right-handed alpha
Helix 44	AE8	D	38	42	Right-handed alpha
Helix 45	AE9	D	82	90	Right-handed alpha
Helix 46	AF1	D	95	100	Right-handed alpha
Helix 47	AF2	D	101	104	Right-handed 310
Helix 48	AF3	D	114	125	Right-handed alpha
Helix 49	AF4	D	127	142	Right-handed alpha
Helix 50	AF5	D	142	157	Right-handed alpha
Helix 51	AF6	D	158	160	Right-handed 310
Helix 52	AF7	D	161	182	Right-handed alpha
Helix 53	AF8	D	187	189	Right-handed 310
Helix 54	AF9	D	190	196	Right-handed alpha
Helix 55	AG1	D	204	215	Right-handed alpha
Helix 56	AG2	D	219	241	Right-handed alpha

There are 4 sheets in PDB entry 6NMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	69	first strand
Strand 2	A	74	81	anti-parallel
Strand 3	A	51	57	parallel
Strand 4	A	31	37	anti-parallel
Strand 5	A	107	111	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	69	first strand
Strand 2	B	74	81	anti-parallel
Strand 3	B	51	57	parallel
Strand 4	B	31	37	anti-parallel
Strand 5	B	107	111	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	69	first strand
Strand 2	C	74	81	anti-parallel
Strand 3	C	51	57	parallel
Strand 4	C	31	37	anti-parallel
Strand 5	C	107	111	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	69	first strand
Strand 2	D	74	81	anti-parallel
Strand 3	D	51	57	parallel
Strand 4	D	31	37	anti-parallel
Strand 5	D	107	111	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NMM