Analysis of interatomic Contacts of Structural Units in PDB entry:
6NN4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NN4 entry

There are 4 chains in PDB entry 6NN4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23SER 543
B
 PHE 24SER 543
C
 GLN 15SER 543
D
 PHE 24SER 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 92 helices in PDB entry 6NN4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
29 34Right-handed alpha
Helix 3
AA3
A
37 44Right-handed alpha
Helix 4
AA4
A
69 80Right-handed alpha
Helix 5
AA5
A
92 109Right-handed alpha
Helix 6
AA6
A
234 247Right-handed alpha
Helix 7
AA7
A
259 271Right-handed alpha
Helix 8
AA8
A
272 275Right-handed 310
Helix 9
AA9
A
285 291Right-handed alpha
Helix 10
AB1
A
291 299Right-handed alpha
Helix 11
AB2
A
306 313Right-handed alpha
Helix 12
AB3
A
314 316Right-handed 310
Helix 13
AB4
A
317 333Right-handed alpha
Helix 14
AB5
A
343 348Right-handed 310
Helix 15
AB6
A
353 367Right-handed alpha
Helix 16
AB7
A
374 379Right-handed alpha
Helix 17
AB8
A
382 400Right-handed alpha
Helix 18
AB9
A
402 414Right-handed alpha
Helix 19
AC1
A
419 435Right-handed alpha
Helix 20
AC2
A
447 455Right-handed alpha
Helix 21
AC3
A
468 475Right-handed alpha
Helix 22
AC4
A
476 478Right-handed 310
Helix 23
AC5
A
493 512Right-handed alpha
Helix 24
AC6
B
29 35Right-handed alpha
Helix 25
AC7
B
37 44Right-handed alpha
Helix 26
AC8
B
69 80Right-handed alpha
Helix 27
AC9
B
92 109Right-handed alpha
Helix 28
AD1
B
234 247Right-handed alpha
Helix 29
AD2
B
259 271Right-handed alpha
Helix 30
AD3
B
272 275Right-handed 310
Helix 31
AD4
B
285 291Right-handed alpha
Helix 32
AD5
B
291 299Right-handed alpha
Helix 33
AD6
B
306 313Right-handed alpha
Helix 34
AD7
B
314 316Right-handed 310
Helix 35
AD8
B
317 333Right-handed alpha
Helix 36
AD9
B
343 348Right-handed 310
Helix 37
AE1
B
353 367Right-handed alpha
Helix 38
AE2
B
374 379Right-handed alpha
Helix 39
AE3
B
382 400Right-handed alpha
Helix 40
AE4
B
402 414Right-handed alpha
Helix 41
AE5
B
419 435Right-handed alpha
Helix 42
AE6
B
447 455Right-handed alpha
Helix 43
AE7
B
468 475Right-handed alpha
Helix 44
AE8
B
476 478Right-handed 310
Helix 45
AE9
B
493 512Right-handed alpha
Helix 46
AF1
C
16 21Right-handed alpha
Helix 47
AF2
C
29 34Right-handed alpha
Helix 48
AF3
C
37 45Right-handed alpha
Helix 49
AF4
C
64 68Right-handed 310
Helix 50
AF5
C
69 80Right-handed alpha
Helix 51
AF6
C
92 109Right-handed alpha
Helix 52
AF7
C
234 247Right-handed alpha
Helix 53
AF8
C
259 271Right-handed alpha
Helix 54
AF9
C
272 275Right-handed 310
Helix 55
AG1
C
285 291Right-handed alpha
Helix 56
AG2
C
291 299Right-handed alpha
Helix 57
AG3
C
306 313Right-handed alpha
Helix 58
AG4
C
314 316Right-handed 310
Helix 59
AG5
C
317 333Right-handed alpha
Helix 60
AG6
C
343 348Right-handed 310
Helix 61
AG7
C
353 367Right-handed alpha
Helix 62
AG8
C
374 379Right-handed alpha
Helix 63
AG9
C
382 400Right-handed alpha
Helix 64
AH1
C
402 414Right-handed alpha
Helix 65
AH2
C
419 436Right-handed alpha
Helix 66
AH3
C
447 455Right-handed alpha
Helix 67
AH4
C
468 475Right-handed alpha
Helix 68
AH5
C
476 478Right-handed 310
Helix 69
AH6
C
493 512Right-handed alpha
Helix 70
AH7
D
29 34Right-handed alpha
Helix 71
AH8
D
37 45Right-handed alpha
Helix 72
AH9
D
64 68Right-handed 310
Helix 73
AI1
D
69 80Right-handed alpha
Helix 74
AI2
D
92 109Right-handed alpha
Helix 75
AI3
D
234 247Right-handed alpha
Helix 76
AI4
D
259 271Right-handed alpha
Helix 77
AI5
D
272 275Right-handed 310
Helix 78
AI6
D
285 291Right-handed alpha
Helix 79
AI7
D
291 299Right-handed alpha
Helix 80
AI8
D
306 313Right-handed alpha
Helix 81
AI9
D
314 316Right-handed 310
Helix 82
AJ1
D
317 333Right-handed alpha
Helix 83
AJ2
D
343 348Right-handed 310
Helix 84
AJ3
D
353 367Right-handed alpha
Helix 85
AJ4
D
374 379Right-handed alpha
Helix 86
AJ5
D
382 400Right-handed alpha
Helix 87
AJ6
D
402 414Right-handed alpha
Helix 88
AJ7
D
419 436Right-handed alpha
Helix 89
AJ8
D
447 455Right-handed alpha
Helix 90
AJ9
D
468 475Right-handed alpha
Helix 91
AK1
D
476 478Right-handed 310
Helix 92
AK2
D
493 512Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6NN4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
81 87parallel
Strand 3
A
121 125parallel
Strand 4
A
251 254parallel
Strand 5
A
278 283parallel
Strand 6
A
301 305parallel
Strand 7
A
336 339parallel
Strand 8
A
370 373parallel
Strand 9
A
58 62parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 485first strand
Strand 2
A
461 466parallel
Strand 3
A
439 443parallel
Strand 4
A
520 526parallel
Strand 5
A
534 541anti-parallel
Strand 6
D
534 541anti-parallel
Strand 7
D
520 526anti-parallel
Strand 8
D
439 443parallel
Strand 9
D
461 466parallel
Strand 10
D
481 485parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
81 87parallel
Strand 3
B
121 125parallel
Strand 4
B
251 254parallel
Strand 5
B
278 283parallel
Strand 6
B
301 305parallel
Strand 7
B
336 339parallel
Strand 8
B
370 373parallel
Strand 9
B
58 62parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
481 485first strand
Strand 2
B
461 466parallel
Strand 3
B
439 443parallel
Strand 4
B
520 526parallel
Strand 5
B
534 541anti-parallel
Strand 6
C
534 541anti-parallel
Strand 7
C
520 526anti-parallel
Strand 8
C
439 443parallel
Strand 9
C
461 466parallel
Strand 10
C
481 485parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 62first strand
Strand 2
C
81 87parallel
Strand 3
C
121 125parallel
Strand 4
C
251 254parallel
Strand 5
C
278 283parallel
Strand 6
C
301 305parallel
Strand 7
C
336 339parallel
Strand 8
C
370 373parallel
Strand 9
C
58 62parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 62first strand
Strand 2
D
81 87parallel
Strand 3
D
121 125parallel
Strand 4
D
251 254parallel
Strand 5
D
278 283parallel
Strand 6
D
301 305parallel
Strand 7
D
336 339parallel
Strand 8
D
370 373parallel
Strand 9
D
58 62parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il