Analysis of interatomic Contacts of Structural Units in PDB entry:
6NN6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NN6 entry

There are 12 chains in PDB entry 6NN6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	ARG 134
B	LEU 22	GLY 101
C	LYS 15	LYS 118
D	THR 32	ALA 124
E	HIS 39	ALA 135
F	ASN 25	GLY 102
G	ALA 14	LYS 118
H	THR 32	ALA 124
I	A -72	T 72
J	A -72	T 72
K	LEU 5	PRO 332
L	MET 1	ARG 74

There are 47 helices in PDB entry 6NN6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	55	Right-handed alpha
Helix 2	AA2	A	63	75	Right-handed alpha
Helix 3	AA3	A	76	78	Right-handed 310
Helix 4	AA4	A	87	114	Right-handed alpha
Helix 5	AA5	A	120	131	Right-handed alpha
Helix 6	AA6	B	30	42	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	94	Right-handed alpha
Helix 9	AA9	C	27	37	Right-handed alpha
Helix 10	AB1	C	46	72	Right-handed alpha
Helix 11	AB2	C	79	88	Right-handed alpha
Helix 12	AB3	D	39	49	Right-handed alpha
Helix 13	AB4	D	57	84	Right-handed alpha
Helix 14	AB5	D	90	102	Right-handed alpha
Helix 15	AB6	D	103	124	Right-handed alpha
Helix 16	AB7	E	46	55	Right-handed alpha
Helix 17	AB8	E	64	75	Right-handed alpha
Helix 18	AB9	E	76	78	Right-handed 310
Helix 19	AC1	E	86	114	Right-handed alpha
Helix 20	AC2	E	123	131	Right-handed alpha
Helix 21	AC3	F	31	42	Right-handed alpha
Helix 22	AC4	F	52	76	Right-handed alpha
Helix 23	AC5	F	82	93	Right-handed alpha
Helix 24	AC6	G	16	22	Right-handed alpha
Helix 25	AC7	G	26	34	Right-handed alpha
Helix 26	AC8	G	46	71	Right-handed alpha
Helix 27	AC9	G	79	89	Right-handed alpha
Helix 28	AD1	G	91	97	Right-handed alpha
Helix 29	AD2	H	37	47	Right-handed alpha
Helix 30	AD3	H	58	74	Right-handed alpha
Helix 31	AD4	H	76	83	Right-handed alpha
Helix 32	AD5	H	92	102	Right-handed alpha
Helix 33	AD6	H	103	124	Right-handed alpha
Helix 34	AD7	K	32	45	Right-handed alpha
Helix 35	AD8	K	48	57	Right-handed alpha
Helix 36	AD9	K	67	90	Right-handed alpha
Helix 37	AE1	K	103	118	Right-handed alpha
Helix 38	AE2	K	122	127	Right-handed 310
Helix 39	AE3	K	140	151	Right-handed alpha
Helix 40	AE4	K	167	175	Right-handed alpha
Helix 41	AE5	K	189	209	Right-handed alpha
Helix 42	AE6	K	227	233	Right-handed alpha
Helix 43	AE7	K	246	257	Right-handed alpha
Helix 44	AE8	K	286	289	Right-handed 310
Helix 45	AE9	K	319	331	Right-handed alpha
Helix 46	AF1	L	22	34	Right-handed alpha
Helix 47	AF2	L	37	39	Right-handed 310

There are 10 sheets in PDB entry 6NN6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	6	9	first strand
Strand 2	K	18	21	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	218	220	first strand
Strand 2	K	184	186	parallel
Strand 3	K	159	162	parallel
Strand 4	K	237	240	parallel
Strand 5	K	265	268	parallel
Strand 6	K	313	317	anti-parallel
Strand 7	K	291	295	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	16	first strand
Strand 2	L	2	7	anti-parallel
Strand 3	L	66	71	parallel
Strand 4	L	41	45	anti-parallel
Strand 5	L	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NN6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NN6