Analysis of interatomic Contacts of Structural Units in PDB entry:
6NN8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NN8 entry

There are 8 chains in PDB entry 6NN8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 20	SER 543
B	ALA 23	ILE 542
C	GLN 18	SER 543
D	VAL 13	SER 543
E	ALA 23	SER 543
F	THR 22	SER 543
G	LEU 20	SER 543
H	PHE 24	SER 543

There are188 helices in PDB entry 6NN8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	34	Right-handed alpha
Helix 2	AA2	A	37	44	Right-handed alpha
Helix 3	AA3	A	64	68	Right-handed 310
Helix 4	AA4	A	69	80	Right-handed alpha
Helix 5	AA5	A	92	109	Right-handed alpha
Helix 6	AA6	A	175	180	Right-handed alpha
Helix 7	AA7	A	234	247	Right-handed alpha
Helix 8	AA8	A	259	271	Right-handed alpha
Helix 9	AA9	A	272	275	Right-handed 310
Helix 10	AB1	A	285	291	Right-handed alpha
Helix 11	AB2	A	291	299	Right-handed alpha
Helix 12	AB3	A	306	313	Right-handed alpha
Helix 13	AB4	A	314	316	Right-handed 310
Helix 14	AB5	A	317	333	Right-handed alpha
Helix 15	AB6	A	343	348	Right-handed 310
Helix 16	AB7	A	353	367	Right-handed alpha
Helix 17	AB8	A	374	379	Right-handed alpha
Helix 18	AB9	A	382	400	Right-handed alpha
Helix 19	AC1	A	402	414	Right-handed alpha
Helix 20	AC2	A	419	435	Right-handed alpha
Helix 21	AC3	A	447	455	Right-handed alpha
Helix 22	AC4	A	468	475	Right-handed alpha
Helix 23	AC5	A	476	478	Right-handed 310
Helix 24	AC6	A	493	512	Right-handed alpha
Helix 25	AC7	B	29	34	Right-handed alpha
Helix 26	AC8	B	37	44	Right-handed alpha
Helix 27	AC9	B	69	80	Right-handed alpha
Helix 28	AD1	B	92	109	Right-handed alpha
Helix 29	AD2	B	159	163	Right-handed 310
Helix 30	AD3	B	175	180	Right-handed alpha
Helix 31	AD4	B	234	248	Right-handed alpha
Helix 32	AD5	B	259	271	Right-handed alpha
Helix 33	AD6	B	272	275	Right-handed 310
Helix 34	AD7	B	285	291	Right-handed alpha
Helix 35	AD8	B	291	299	Right-handed alpha
Helix 36	AD9	B	306	313	Right-handed alpha
Helix 37	AE1	B	314	316	Right-handed 310
Helix 38	AE2	B	317	333	Right-handed alpha
Helix 39	AE3	B	343	348	Right-handed 310
Helix 40	AE4	B	353	367	Right-handed alpha
Helix 41	AE5	B	374	379	Right-handed alpha
Helix 42	AE6	B	382	400	Right-handed alpha
Helix 43	AE7	B	402	414	Right-handed alpha
Helix 44	AE8	B	419	436	Right-handed alpha
Helix 45	AE9	B	447	455	Right-handed alpha
Helix 46	AF1	B	468	475	Right-handed alpha
Helix 47	AF2	B	476	478	Right-handed 310
Helix 48	AF3	B	493	512	Right-handed alpha
Helix 49	AF4	C	22	26	Right-handed 310
Helix 50	AF5	C	29	34	Right-handed alpha
Helix 51	AF6	C	37	45	Right-handed alpha
Helix 52	AF7	C	64	68	Right-handed 310
Helix 53	AF8	C	69	80	Right-handed alpha
Helix 54	AF9	C	92	110	Right-handed alpha
Helix 55	AG1	C	111	113	Right-handed 310
Helix 56	AG2	C	173	179	Right-handed 310
Helix 57	AG3	C	234	247	Right-handed alpha
Helix 58	AG4	C	259	271	Right-handed alpha
Helix 59	AG5	C	272	275	Right-handed 310
Helix 60	AG6	C	285	291	Right-handed alpha
Helix 61	AG7	C	291	299	Right-handed alpha
Helix 62	AG8	C	306	313	Right-handed alpha
Helix 63	AG9	C	314	316	Right-handed 310
Helix 64	AH1	C	317	333	Right-handed alpha
Helix 65	AH2	C	343	348	Right-handed 310
Helix 66	AH3	C	353	367	Right-handed alpha
Helix 67	AH4	C	374	379	Right-handed alpha
Helix 68	AH5	C	382	400	Right-handed alpha
Helix 69	AH6	C	402	414	Right-handed alpha
Helix 70	AH7	C	419	436	Right-handed alpha
Helix 71	AH8	C	447	455	Right-handed alpha
Helix 72	AH9	C	468	475	Right-handed alpha
Helix 73	AI1	C	476	478	Right-handed 310
Helix 74	AI2	C	493	513	Right-handed alpha
Helix 75	AI3	C	530	532	Right-handed 310
Helix 76	AI4	D	14	21	Right-handed alpha
Helix 77	AI5	D	22	27	Right-handed 310
Helix 78	AI6	D	29	34	Right-handed alpha
Helix 79	AI7	D	37	45	Right-handed alpha
Helix 80	AI8	D	64	68	Right-handed 310
Helix 81	AI9	D	71	80	Right-handed alpha
Helix 82	AJ1	D	93	109	Right-handed alpha
Helix 83	AJ2	D	113	117	Right-handed 310
Helix 84	AJ3	D	239	247	Right-handed alpha
Helix 85	AJ4	D	259	271	Right-handed alpha
Helix 86	AJ5	D	272	275	Right-handed 310
Helix 87	AJ6	D	285	291	Right-handed alpha
Helix 88	AJ7	D	291	299	Right-handed alpha
Helix 89	AJ8	D	306	313	Right-handed alpha
Helix 90	AJ9	D	314	316	Right-handed 310
Helix 91	AK1	D	317	333	Right-handed alpha
Helix 92	AK2	D	343	348	Right-handed 310
Helix 93	AK3	D	353	367	Right-handed alpha
Helix 94	AK4	D	382	400	Right-handed alpha
Helix 95	AK5	D	402	414	Right-handed alpha
Helix 96	AK6	D	419	435	Right-handed alpha
Helix 97	AK7	D	447	455	Right-handed alpha
Helix 98	AK8	D	468	475	Right-handed alpha
Helix 99	AK9	D	476	478	Right-handed 310
Helix 100	AL1	D	493	512	Right-handed alpha
Helix 101	AL2	E	29	34	Right-handed alpha
Helix 102	AL3	E	37	45	Right-handed alpha
Helix 103	AL4	E	69	80	Right-handed alpha
Helix 104	AL5	E	92	109	Right-handed alpha
Helix 105	AL6	E	157	161	Right-handed 310
Helix 106	AL7	E	175	180	Right-handed alpha
Helix 107	AL8	E	234	247	Right-handed alpha
Helix 108	AL9	E	259	271	Right-handed alpha
Helix 109	AM1	E	272	277	Right-handed 310
Helix 110	AM2	E	285	291	Right-handed alpha
Helix 111	AM3	E	291	299	Right-handed alpha
Helix 112	AM4	E	306	313	Right-handed alpha
Helix 113	AM5	E	314	316	Right-handed 310
Helix 114	AM6	E	317	332	Right-handed alpha
Helix 115	AM7	E	343	348	Right-handed 310
Helix 116	AM8	E	353	367	Right-handed alpha
Helix 117	AM9	E	374	379	Right-handed alpha
Helix 118	AN1	E	382	400	Right-handed alpha
Helix 119	AN2	E	402	414	Right-handed alpha
Helix 120	AN3	E	419	436	Right-handed alpha
Helix 121	AN4	E	447	455	Right-handed alpha
Helix 122	AN5	E	468	475	Right-handed alpha
Helix 123	AN6	E	476	478	Right-handed 310
Helix 124	AN7	E	495	512	Right-handed alpha
Helix 125	AN8	F	23	27	Right-handed 310
Helix 126	AN9	F	29	34	Right-handed alpha
Helix 127	AO1	F	37	45	Right-handed alpha
Helix 128	AO2	F	64	68	Right-handed 310
Helix 129	AO3	F	69	80	Right-handed alpha
Helix 130	AO4	F	92	109	Right-handed alpha
Helix 131	AO5	F	234	247	Right-handed alpha
Helix 132	AO6	F	259	271	Right-handed alpha
Helix 133	AO7	F	285	299	Right-handed alpha
Helix 134	AO8	F	305	313	Right-handed alpha
Helix 135	AO9	F	314	316	Right-handed 310
Helix 136	AP1	F	317	333	Right-handed alpha
Helix 137	AP2	F	343	348	Right-handed 310
Helix 138	AP3	F	353	367	Right-handed alpha
Helix 139	AP4	F	382	399	Right-handed alpha
Helix 140	AP5	F	402	414	Right-handed alpha
Helix 141	AP6	F	419	436	Right-handed alpha
Helix 142	AP7	F	447	455	Right-handed alpha
Helix 143	AP8	F	468	475	Right-handed alpha
Helix 144	AP9	F	476	478	Right-handed 310
Helix 145	AQ1	F	493	512	Right-handed alpha
Helix 146	AQ2	G	29	34	Right-handed alpha
Helix 147	AQ3	G	37	45	Right-handed alpha
Helix 148	AQ4	G	64	68	Right-handed 310
Helix 149	AQ5	G	69	80	Right-handed alpha
Helix 150	AQ6	G	95	109	Right-handed alpha
Helix 151	AQ7	G	259	271	Right-handed alpha
Helix 152	AQ8	G	285	291	Right-handed alpha
Helix 153	AQ9	G	291	297	Right-handed alpha
Helix 154	AR1	G	305	313	Right-handed alpha
Helix 155	AR2	G	314	316	Right-handed 310
Helix 156	AR3	G	317	333	Right-handed alpha
Helix 157	AR4	G	343	348	Right-handed 310
Helix 158	AR5	G	353	367	Right-handed alpha
Helix 159	AR6	G	374	379	Right-handed alpha
Helix 160	AR7	G	382	399	Right-handed alpha
Helix 161	AR8	G	402	414	Right-handed alpha
Helix 162	AR9	G	419	436	Right-handed alpha
Helix 163	AS1	G	447	456	Right-handed alpha
Helix 164	AS2	G	468	475	Right-handed alpha
Helix 165	AS3	G	476	478	Right-handed 310
Helix 166	AS4	G	493	512	Right-handed alpha
Helix 167	AS5	H	29	34	Right-handed alpha
Helix 168	AS6	H	37	44	Right-handed alpha
Helix 169	AS7	H	64	68	Right-handed 310
Helix 170	AS8	H	69	78	Right-handed alpha
Helix 171	AS9	H	93	109	Right-handed alpha
Helix 172	AT1	H	237	243	Right-handed alpha
Helix 173	AT2	H	259	271	Right-handed alpha
Helix 174	AT3	H	285	291	Right-handed alpha
Helix 175	AT4	H	291	299	Right-handed alpha
Helix 176	AT5	H	305	313	Right-handed alpha
Helix 177	AT6	H	314	316	Right-handed 310
Helix 178	AT7	H	317	333	Right-handed alpha
Helix 179	AT8	H	343	348	Right-handed 310
Helix 180	AT9	H	353	367	Right-handed alpha
Helix 181	AU1	H	374	379	Right-handed alpha
Helix 182	AU2	H	382	400	Right-handed alpha
Helix 183	AU3	H	402	414	Right-handed alpha
Helix 184	AU4	H	419	435	Right-handed alpha
Helix 185	AU5	H	447	455	Right-handed alpha
Helix 186	AU6	H	468	475	Right-handed alpha
Helix 187	AU7	H	476	478	Right-handed 310
Helix 188	AU8	H	493	512	Right-handed alpha

There are 20 sheets in PDB entry 6NN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	62	first strand
Strand 2	A	81	87	parallel
Strand 3	A	121	125	parallel
Strand 4	A	251	254	parallel
Strand 5	A	278	283	parallel
Strand 6	A	301	305	parallel
Strand 7	A	336	339	parallel
Strand 8	A	370	373	parallel
Strand 9	A	58	62	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	213	215	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	152	154	parallel
Strand 3	A	204	211	anti-parallel
Strand 4	A	193	201	anti-parallel
Strand 5	A	185	188	anti-parallel
Strand 6	A	221	222	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	485	first strand
Strand 2	A	461	466	parallel
Strand 3	A	439	443	parallel
Strand 4	A	520	525	parallel
Strand 5	A	536	541	anti-parallel
Strand 6	D	534	541	anti-parallel
Strand 7	D	520	526	anti-parallel
Strand 8	D	439	443	parallel
Strand 9	D	461	466	parallel
Strand 10	D	481	485	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	83	87	parallel
Strand 3	B	121	125	parallel
Strand 4	B	251	254	parallel
Strand 5	B	278	283	parallel
Strand 6	B	301	305	parallel
Strand 7	B	336	339	parallel
Strand 8	B	370	373	parallel
Strand 9	B	58	62	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	213	215	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	170	first strand
Strand 2	B	151	155	parallel
Strand 3	B	205	211	anti-parallel
Strand 4	B	193	200	anti-parallel
Strand 5	B	185	188	anti-parallel
Strand 6	B	221	222	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	485	first strand
Strand 2	B	461	466	parallel
Strand 3	B	439	443	parallel
Strand 4	B	520	525	parallel
Strand 5	B	536	541	anti-parallel
Strand 6	H	536	541	anti-parallel
Strand 7	H	520	525	anti-parallel
Strand 8	H	439	443	parallel
Strand 9	H	461	466	parallel
Strand 10	H	481	485	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	62	first strand
Strand 2	C	83	87	parallel
Strand 3	C	121	125	parallel
Strand 4	C	251	254	parallel
Strand 5	C	278	283	parallel
Strand 6	C	301	305	parallel
Strand 7	C	336	339	parallel
Strand 8	C	370	373	parallel
Strand 9	C	58	62	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	220	222	anti-parallel
Strand 3	C	185	188	anti-parallel
Strand 4	C	193	199	anti-parallel
Strand 5	C	206	211	anti-parallel
Strand 6	C	151	155	anti-parallel
Strand 7	C	168	170	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	146	first strand
Strand 2	C	213	215	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	485	first strand
Strand 2	C	461	466	parallel
Strand 3	C	439	443	parallel
Strand 4	C	520	526	parallel
Strand 5	C	534	541	anti-parallel
Strand 6	F	536	541	anti-parallel
Strand 7	F	520	525	anti-parallel
Strand 8	F	439	443	parallel
Strand 9	F	461	466	parallel
Strand 10	F	481	485	parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	62	first strand
Strand 2	D	81	87	parallel
Strand 3	D	121	125	parallel
Strand 4	D	251	257	parallel
Strand 5	D	278	283	parallel
Strand 6	D	301	305	parallel
Strand 7	D	336	339	parallel
Strand 8	D	370	373	parallel
Strand 9	D	58	62	parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	63	first strand
Strand 2	E	81	87	parallel
Strand 3	E	121	125	parallel
Strand 4	E	251	254	parallel
Strand 5	E	278	283	parallel
Strand 6	E	301	305	parallel
Strand 7	E	336	339	parallel
Strand 8	E	370	373	parallel
Strand 9	E	58	63	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	146	first strand
Strand 2	E	214	215	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	170	first strand
Strand 2	E	152	155	parallel
Strand 3	E	204	211	anti-parallel
Strand 4	E	193	201	anti-parallel
Strand 5	E	185	188	anti-parallel
Strand 6	E	221	222	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	481	485	first strand
Strand 2	E	461	466	parallel
Strand 3	E	439	443	parallel
Strand 4	E	520	525	parallel
Strand 5	E	536	541	anti-parallel
Strand 6	G	534	541	anti-parallel
Strand 7	G	520	526	anti-parallel
Strand 8	G	439	443	parallel
Strand 9	G	461	466	parallel
Strand 10	G	481	485	parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	62	first strand
Strand 2	F	83	87	parallel
Strand 3	F	121	125	parallel
Strand 4	F	251	257	parallel
Strand 5	F	278	283	parallel
Strand 6	F	301	304	parallel
Strand 7	F	336	338	parallel
Strand 8	F	370	373	parallel
Strand 9	F	58	62	parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	62	first strand
Strand 2	G	81	87	parallel
Strand 3	G	121	125	parallel
Strand 4	G	251	253	parallel
Strand 5	G	278	283	parallel
Strand 6	G	301	304	parallel
Strand 7	G	336	338	parallel
Strand 8	G	370	373	parallel
Strand 9	G	58	62	parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	62	first strand
Strand 2	H	81	87	parallel
Strand 3	H	121	125	parallel
Strand 4	H	251	252	parallel
Strand 5	H	278	283	parallel
Strand 6	H	301	304	parallel
Strand 7	H	336	338	parallel
Strand 8	H	370	373	parallel
Strand 9	H	58	62	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NN8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NN8