Analysis of interatomic Contacts of Structural Units in PDB entry:
6NNQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NNQ entry

There are 2 chains in PDB entry 6NNQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 420LEU 643
B
 ASP 16GLY 93
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6NNQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
426 436Right-handed alpha
Helix 2
AA2
A
454 458Right-handed alpha
Helix 3
AA3
A
459 461Right-handed 310
Helix 4
AA4
A
468 482Right-handed alpha
Helix 5
AA5
A
496 505Right-handed alpha
Helix 6
AA6
A
505 510Right-handed alpha
Helix 7
AA7
A
511 514Right-handed 310
Helix 8
AA8
A
517 521Right-handed 310
Helix 9
AA9
A
556 572Right-handed alpha
Helix 10
AB1
A
601 615Right-handed alpha
Helix 11
AB2
A
622 624Right-handed 310
Helix 12
AB3
A
625 640Right-handed alpha
Helix 13
AB4
B
40 52Right-handed alpha
Helix 14
AB5
B
54 56Right-handed 310
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There are 4 sheets in PDB entry 6NNQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 447first strand
Strand 2
A
450 453anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 467first strand
Strand 2
B
91 92anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 492first strand
Strand 2
A
523 529parallel
Strand 3
A
534 540anti-parallel
Strand 4
A
545 549anti-parallel
Strand 5
A
585 588parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 35first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
82 88parallel
Strand 4
B
58 62anti-parallel
Strand 5
B
65 66anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il