Analysis of interatomic Contacts of Structural Units in PDB entry:
6NNV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NNV entry

There are 20 chains in PDB entry 6NNV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 18	ALA 136
B	ALA 18	GLU 140
C	ALA 18	HIS 142
D	ALA 18	GLU 140
I	PHE 2	PHE 2
I	ASP 6	VAL 7
I	TYR 9	TYR 9
I	TRP 11	LYS 15
J	PHE 2	PHE 2
J	ASP 6	VAL 7
J	TYR 9	TYR 9
J	TRP 11	LYS 15
K	PHE 2	PHE 2
K	ASP 6	VAL 7
K	TYR 9	TYR 9
K	TRP 11	LYS 15
L	PHE 2	PHE 2
L	ASP 6	VAL 7
L	TYR 9	TYR 9
L	TRP 11	LYS 15

There are 15 helices in PDB entry 6NNV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	82	Right-handed 310
Helix 2	AA2	A	88	93	Right-handed alpha
Helix 3	AA3	A	105	109	Right-handed 310
Helix 4	AA4	B	78	82	Right-handed 310
Helix 5	AA5	B	89	94	Right-handed 310
Helix 6	AA6	B	105	109	Right-handed 310
Helix 7	AA7	B	134	139	Right-handed alpha
Helix 8	AA8	C	49	52	Right-handed 310
Helix 9	AA9	C	78	82	Right-handed 310
Helix 10	AB1	C	88	93	Right-handed alpha
Helix 11	AB2	C	105	109	Right-handed 310
Helix 12	AB3	C	134	142	Right-handed alpha
Helix 13	AB4	D	78	82	Right-handed 310
Helix 14	AB5	D	88	93	Right-handed alpha
Helix 15	AB6	D	105	109	Right-handed 310

There are 8 sheets in PDB entry 6NNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	121	131	parallel
Strand 3	A	110	117	anti-parallel
Strand 4	A	54	59	anti-parallel
Strand 5	A	62	68	anti-parallel
Strand 6	A	71	72	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	41	first strand
Strand 2	A	96	101	anti-parallel
Strand 3	A	85	87	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	121	131	parallel
Strand 3	B	110	117	anti-parallel
Strand 4	B	54	59	anti-parallel
Strand 5	B	62	68	anti-parallel
Strand 6	B	71	72	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	41	first strand
Strand 2	B	96	101	anti-parallel
Strand 3	B	85	87	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	121	131	parallel
Strand 3	C	110	117	anti-parallel
Strand 4	C	54	59	anti-parallel
Strand 5	C	62	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	41	first strand
Strand 2	C	96	101	anti-parallel
Strand 3	C	85	87	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	31	first strand
Strand 2	D	121	131	parallel
Strand 3	D	110	117	anti-parallel
Strand 4	D	54	59	anti-parallel
Strand 5	D	62	68	anti-parallel
Strand 6	D	71	72	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	41	first strand
Strand 2	D	96	101	anti-parallel
Strand 3	D	85	87	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NNV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NNV