Analysis of interatomic Contacts of Structural Units in PDB entry:
6NOB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NOB entry

There is 1 chain in PDB entry 6NOB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4ARG 637
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6NOB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 89Right-handed alpha
Helix 2
AA2
A
107 113Right-handed alpha
Helix 3
AA3
A
181 186Right-handed 310
Helix 4
AA4
A
210 214Right-handed 310
Helix 5
AA5
A
230 234Right-handed 310
Helix 6
AA6
A
297 299Right-handed 310
Helix 7
AA7
A
302 306Right-handed 310
Helix 8
AA8
A
490 497Right-handed alpha
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There are 11 sheets in PDB entry 6NOB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
30 34anti-parallel
Strand 4
A
40 45anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 58first strand
Strand 2
A
16 23anti-parallel
Strand 3
A
72 80anti-parallel
Strand 4
A
91 92anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
159 165anti-parallel
Strand 3
A
141 149anti-parallel
Strand 4
A
127 138anti-parallel
Strand 5
A
468 469parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 202first strand
Strand 2
A
216 227anti-parallel
Strand 3
A
235 243anti-parallel
Strand 4
A
253 256anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 273first strand
Strand 2
A
285 295anti-parallel
Strand 3
A
337 347anti-parallel
Strand 4
A
357 365anti-parallel
Strand 5
A
311 312parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
395 396anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 382first strand
Strand 2
A
385 392anti-parallel
Strand 3
A
405 415anti-parallel
Strand 4
A
418 428anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 442first strand
Strand 2
A
448 454anti-parallel
Strand 3
A
471 472anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 442first strand
Strand 2
A
448 454anti-parallel
Strand 3
A
476 481anti-parallel
Strand 4
A
484 489anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 501first strand
Strand 2
A
624 632anti-parallel
Strand 3
A
519 526anti-parallel
Strand 4
A
582 588anti-parallel
Strand 5
A
591 596anti-parallel
Strand 6
A
602 606anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 507first strand
Strand 2
A
510 515anti-parallel
Strand 3
A
614 620anti-parallel
Strand 4
A
532 540anti-parallel
Strand 5
A
547 555anti-parallel
Strand 6
A
558 564anti-parallel
Strand 7
A
573 574anti-parallel
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