Analysis of interatomic Contacts of Structural Units in PDB entry:
6NOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NOD entry

There are 6 chains in PDB entry 6NOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 174TYR 517
B
 ASP 174TYR 517
C
 ASP 174TYR 517
D
 U 1 A 8
E
 U 1 A 8
F
 U 1 A 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 6NOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
175 183Right-handed alpha
Helix 2
AA2
A
191 196Right-handed 310
Helix 3
AA3
A
198 204Right-handed alpha
Helix 4
AA4
A
205 219Right-handed alpha
Helix 5
AA5
A
221 224Right-handed 310
Helix 6
AA6
A
225 235Right-handed alpha
Helix 7
AA7
A
235 240Right-handed alpha
Helix 8
AA8
A
244 256Right-handed alpha
Helix 9
AA9
A
257 269Right-handed alpha
Helix 10
AB1
A
271 276Right-handed alpha
Helix 11
AB2
A
280 292Right-handed alpha
Helix 12
AB3
A
293 305Right-handed alpha
Helix 13
AB4
A
307 313Right-handed alpha
Helix 14
AB5
A
316 328Right-handed alpha
Helix 15
AB6
A
329 332Right-handed 310
Helix 16
AB7
A
333 343Right-handed alpha
Helix 17
AB8
A
345 353Right-handed alpha
Helix 18
AB9
A
355 367Right-handed alpha
Helix 19
AC1
A
368 382Right-handed alpha
Helix 20
AC2
A
382 388Right-handed alpha
Helix 21
AC3
A
391 403Right-handed alpha
Helix 22
AC4
A
404 418Right-handed alpha
Helix 23
AC5
A
418 424Right-handed alpha
Helix 24
AC6
A
428 439Right-handed alpha
Helix 25
AC7
A
440 454Right-handed alpha
Helix 26
AC8
A
460 466Right-handed alpha
Helix 27
AC9
A
470 482Right-handed alpha
Helix 28
AD1
A
483 495Right-handed alpha
Helix 29
AD2
A
497 502Right-handed alpha
Helix 30
AD3
A
504 514Right-handed alpha
Helix 31
AD4
B
175 183Right-handed alpha
Helix 32
AD5
B
191 196Right-handed 310
Helix 33
AD6
B
198 205Right-handed alpha
Helix 34
AD7
B
205 219Right-handed alpha
Helix 35
AD8
B
224 227Right-handed 310
Helix 36
AD9
B
228 235Right-handed alpha
Helix 37
AE1
B
235 240Right-handed alpha
Helix 38
AE2
B
244 256Right-handed alpha
Helix 39
AE3
B
257 269Right-handed alpha
Helix 40
AE4
B
271 276Right-handed alpha
Helix 41
AE5
B
280 292Right-handed alpha
Helix 42
AE6
B
293 305Right-handed alpha
Helix 43
AE7
B
307 313Right-handed alpha
Helix 44
AE8
B
316 328Right-handed alpha
Helix 45
AE9
B
329 332Right-handed 310
Helix 46
AF1
B
333 342Right-handed alpha
Helix 47
AF2
B
345 352Right-handed alpha
Helix 48
AF3
B
355 367Right-handed alpha
Helix 49
AF4
B
368 382Right-handed alpha
Helix 50
AF5
B
382 388Right-handed alpha
Helix 51
AF6
B
391 403Right-handed alpha
Helix 52
AF7
B
404 418Right-handed alpha
Helix 53
AF8
B
418 424Right-handed alpha
Helix 54
AF9
B
428 439Right-handed alpha
Helix 55
AG1
B
440 454Right-handed alpha
Helix 56
AG2
B
460 466Right-handed alpha
Helix 57
AG3
B
470 482Right-handed alpha
Helix 58
AG4
B
483 495Right-handed alpha
Helix 59
AG5
B
497 502Right-handed alpha
Helix 60
AG6
B
504 515Right-handed alpha
Helix 61
AG7
C
175 183Right-handed alpha
Helix 62
AG8
C
191 196Right-handed 310
Helix 63
AG9
C
198 204Right-handed alpha
Helix 64
AH1
C
205 219Right-handed alpha
Helix 65
AH2
C
221 224Right-handed 310
Helix 66
AH3
C
225 235Right-handed alpha
Helix 67
AH4
C
235 240Right-handed alpha
Helix 68
AH5
C
244 256Right-handed alpha
Helix 69
AH6
C
257 269Right-handed alpha
Helix 70
AH7
C
271 276Right-handed alpha
Helix 71
AH8
C
280 292Right-handed alpha
Helix 72
AH9
C
293 305Right-handed alpha
Helix 73
AI1
C
307 313Right-handed alpha
Helix 74
AI2
C
316 328Right-handed alpha
Helix 75
AI3
C
329 332Right-handed 310
Helix 76
AI4
C
333 342Right-handed alpha
Helix 77
AI5
C
345 353Right-handed alpha
Helix 78
AI6
C
355 367Right-handed alpha
Helix 79
AI7
C
368 382Right-handed alpha
Helix 80
AI8
C
382 388Right-handed alpha
Helix 81
AI9
C
391 403Right-handed alpha
Helix 82
AJ1
C
404 418Right-handed alpha
Helix 83
AJ2
C
418 424Right-handed alpha
Helix 84
AJ3
C
428 439Right-handed alpha
Helix 85
AJ4
C
440 454Right-handed alpha
Helix 86
AJ5
C
460 466Right-handed alpha
Helix 87
AJ6
C
470 482Right-handed alpha
Helix 88
AJ7
C
483 495Right-handed alpha
Helix 89
AJ8
C
497 502Right-handed alpha
Helix 90
AJ9
C
504 514Right-handed alpha
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There are no sheets in PDB entry 6NOD
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