Analysis of interatomic Contacts of Structural Units in PDB entry:
6NOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NOP entry

There are 2 chains in PDB entry 6NOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU -6GLN 257
A
 GLY -2GLN 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6NOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
14 27Right-handed alpha
Helix 2
AA2
B
41 47Right-handed alpha
Helix 3
AA3
B
57 63Right-handed alpha
Helix 4
AA4
B
67 72Right-handed 310
Helix 5
AA5
B
86 90Right-handed 310
Helix 6
AA6
B
91 99Right-handed alpha
Helix 7
AA7
B
100 103Right-handed 310
Helix 8
AA8
B
104 111Right-handed alpha
Helix 9
AA9
B
112 114Right-handed 310
Helix 10
AB1
B
129 138Right-handed alpha
Helix 11
AB2
B
149 169Right-handed alpha
Helix 12
AB3
B
192 206Right-handed alpha
Helix 13
AB4
B
218 228Right-handed alpha
Helix 14
AB5
B
230 235Right-handed alpha
Helix 15
AB6
B
236 239Right-handed 310
Helix 16
AB7
B
240 252Right-handed alpha
Helix 17
AB8
A
14 27Right-handed alpha
Helix 18
AB9
A
41 47Right-handed alpha
Helix 19
AC1
A
57 63Right-handed alpha
Helix 20
AC2
A
67 72Right-handed 310
Helix 21
AC3
A
86 90Right-handed 310
Helix 22
AC4
A
91 100Right-handed alpha
Helix 23
AC5
A
101 111Right-handed alpha
Helix 24
AC6
A
112 117Right-handed 310
Helix 25
AC7
A
129 138Right-handed alpha
Helix 26
AC8
A
149 169Right-handed alpha
Helix 27
AC9
A
192 206Right-handed alpha
Helix 28
AD1
A
219 228Right-handed alpha
Helix 29
AD2
A
230 235Right-handed alpha
Helix 30
AD3
A
236 239Right-handed 310
Helix 31
AD4
A
240 250Right-handed alpha
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There are 4 sheets in PDB entry 6NOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
80 83anti-parallel
Strand 3
B
32 36parallel
Strand 4
B
119 123parallel
Strand 5
B
2 6parallel
Strand 6
B
141 147parallel
Strand 7
B
175 184parallel
Strand 8
B
215 216parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 187first strand
Strand 2
B
190 191anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
80 83anti-parallel
Strand 3
A
32 36parallel
Strand 4
A
119 123parallel
Strand 5
A
2 6parallel
Strand 6
A
141 147parallel
Strand 7
A
175 184parallel
Strand 8
A
215 216parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
190 191anti-parallel
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