Analysis of interatomic Contacts of Structural Units in PDB entry:
6NOT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NOT entry

There are 2 chains in PDB entry 6NOT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 5	LYS 698
B	HIS -1	LYS 698

There are 46 helices in PDB entry 6NOT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	8	Right-handed 310
Helix 2	AA2	A	25	36	Right-handed alpha
Helix 3	AA3	A	89	99	Right-handed alpha
Helix 4	AA4	A	113	126	Right-handed alpha
Helix 5	AA5	A	143	154	Right-handed alpha
Helix 6	AA6	A	168	172	Right-handed 310
Helix 7	AA7	A	201	203	Right-handed 310
Helix 8	AA8	A	204	220	Right-handed alpha
Helix 9	AA9	A	221	223	Right-handed 310
Helix 10	AB1	A	224	232	Right-handed alpha
Helix 11	AB2	A	237	251	Right-handed alpha
Helix 12	AB3	A	267	279	Right-handed alpha
Helix 13	AB4	A	281	286	Right-handed alpha
Helix 14	AB5	A	419	434	Right-handed alpha
Helix 15	AB6	A	454	467	Right-handed alpha
Helix 16	AB7	A	517	519	Right-handed 310
Helix 17	AB8	A	546	559	Right-handed alpha
Helix 18	AB9	A	590	602	Right-handed alpha
Helix 19	AC1	A	603	605	Right-handed 310
Helix 20	AC2	A	624	635	Right-handed alpha
Helix 21	AC3	A	658	660	Right-handed 310
Helix 22	AC4	A	662	671	Right-handed alpha
Helix 23	AC5	A	688	696	Right-handed alpha
Helix 24	AC6	B	6	8	Right-handed 310
Helix 25	AC7	B	26	36	Right-handed alpha
Helix 26	AC8	B	89	99	Right-handed alpha
Helix 27	AC9	B	113	125	Right-handed alpha
Helix 28	AD1	B	143	154	Right-handed alpha
Helix 29	AD2	B	168	172	Right-handed 310
Helix 30	AD3	B	201	203	Right-handed 310
Helix 31	AD4	B	204	221	Right-handed alpha
Helix 32	AD5	B	223	231	Right-handed alpha
Helix 33	AD6	B	237	251	Right-handed alpha
Helix 34	AD7	B	267	279	Right-handed alpha
Helix 35	AD8	B	281	286	Right-handed alpha
Helix 36	AD9	B	416	420	Right-handed 310
Helix 37	AE1	B	421	434	Right-handed alpha
Helix 38	AE2	B	454	470	Right-handed alpha
Helix 39	AE3	B	517	519	Right-handed 310
Helix 40	AE4	B	547	558	Right-handed alpha
Helix 41	AE5	B	589	602	Right-handed alpha
Helix 42	AE6	B	603	605	Right-handed 310
Helix 43	AE7	B	624	635	Right-handed alpha
Helix 44	AE8	B	658	660	Right-handed 310
Helix 45	AE9	B	662	671	Right-handed alpha
Helix 46	AF1	B	688	696	Right-handed alpha

There are 20 sheets in PDB entry 6NOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	10	16	parallel
Strand 4	A	101	107	parallel
Strand 5	A	130	135	parallel
Strand 6	A	255	259	parallel
Strand 7	A	159	161	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	166	first strand
Strand 2	A	174	177	anti-parallel
Strand 3	A	182	186	anti-parallel
Strand 4	A	195	198	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	302	first strand
Strand 2	A	287	292	anti-parallel
Strand 3	A	396	397	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	351	first strand
Strand 2	A	340	343	anti-parallel
Strand 3	A	388	390	anti-parallel
Strand 4	A	310	319	anti-parallel
Strand 5	A	323	332	anti-parallel
Strand 6	A	374	378	anti-parallel
Strand 7	A	355	358	anti-parallel
Strand 8	A	363	366	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	336	first strand
Strand 2	A	368	370	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	441	first strand
Strand 2	A	448	452	anti-parallel
Strand 3	A	408	414	anti-parallel
Strand 4	A	473	475	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	441	first strand
Strand 2	A	448	452	anti-parallel
Strand 3	A	408	414	anti-parallel
Strand 4	A	479	480	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	608	621	anti-parallel
Strand 3	A	648	656	anti-parallel
Strand 4	A	638	645	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	608	621	anti-parallel
Strand 3	A	676	686	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	496	first strand
Strand 2	A	507	515	anti-parallel
Strand 3	A	571	579	anti-parallel
Strand 4	A	531	535	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	10	16	parallel
Strand 4	B	101	107	parallel
Strand 5	B	130	135	parallel
Strand 6	B	255	259	parallel
Strand 7	B	159	161	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	166	first strand
Strand 2	B	174	177	anti-parallel
Strand 3	B	183	186	anti-parallel
Strand 4	B	195	198	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	302	first strand
Strand 2	B	287	292	anti-parallel
Strand 3	B	396	398	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	340	343	anti-parallel
Strand 3	B	388	390	anti-parallel
Strand 4	B	310	319	anti-parallel
Strand 5	B	323	332	anti-parallel
Strand 6	B	374	378	anti-parallel
Strand 7	B	355	358	anti-parallel
Strand 8	B	363	366	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	368	370	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	441	first strand
Strand 2	B	448	452	anti-parallel
Strand 3	B	408	414	anti-parallel
Strand 4	B	473	475	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	441	first strand
Strand 2	B	448	452	anti-parallel
Strand 3	B	408	414	anti-parallel
Strand 4	B	479	480	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	486	first strand
Strand 2	B	607	621	anti-parallel
Strand 3	B	648	656	anti-parallel
Strand 4	B	638	645	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	486	first strand
Strand 2	B	607	621	anti-parallel
Strand 3	B	676	686	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	496	first strand
Strand 2	B	507	515	anti-parallel
Strand 3	B	571	575	anti-parallel
Strand 4	B	531	535	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NOT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NOT