Analysis of interatomic Contacts of Structural Units in PDB entry:
6NOW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NOW entry

There are 2 chains in PDB entry 6NOW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 786LEU 986
B
 GLU 791LEU 986
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6NOW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
786 810Right-handed alpha
Helix 2
AA2
A
813 834Right-handed alpha
Helix 3
AA3
A
837 876Right-handed alpha
Helix 4
AA4
A
892 907Right-handed alpha
Helix 5
AA5
A
938 951Right-handed alpha
Helix 6
AA6
A
969 985Right-handed alpha
Helix 7
AA7
B
792 810Right-handed alpha
Helix 8
AA8
B
813 833Right-handed alpha
Helix 9
AA9
B
837 876Right-handed alpha
Helix 10
AB1
B
892 907Right-handed alpha
Helix 11
AB2
B
938 951Right-handed alpha
Helix 12
AB3
B
969 985Right-handed alpha
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There are 2 sheets in PDB entry 6NOW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
883 887first strand
Strand 2
A
911 917parallel
Strand 3
A
922 928anti-parallel
Strand 4
A
960 966anti-parallel
Strand 5
A
953 956anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
883 887first strand
Strand 2
B
911 917parallel
Strand 3
B
922 928anti-parallel
Strand 4
B
960 966anti-parallel
Strand 5
B
953 956anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il