Analysis of interatomic Contacts of Structural Units in PDB entry:
6NPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NPJ entry

There are 2 chains in PDB entry 6NPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 TRP 683SER 1136
B
 TRP 683SER 1136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6NPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
687 704Right-handed alpha
Helix 2
AA2
C
706 710Right-handed 310
Helix 3
AA3
C
727 733Right-handed alpha
Helix 4
AA4
C
756 761Right-handed alpha
Helix 5
AA5
C
761 774Right-handed alpha
Helix 6
AA6
C
787 798Right-handed alpha
Helix 7
AA7
C
821 824Right-handed 310
Helix 8
AA8
C
825 836Right-handed alpha
Helix 9
AA9
C
929 937Right-handed alpha
Helix 10
AB1
C
958 969Right-handed alpha
Helix 11
AB2
C
989 1003Right-handed alpha
Helix 12
AB3
C
1024 1032Right-handed alpha
Helix 13
AB4
C
1033 1036Right-handed 310
Helix 14
AB5
C
1041 1048Right-handed alpha
Helix 15
AB6
C
1049 1051Right-handed 310
Helix 16
AB7
C
1066 1084Right-handed alpha
Helix 17
AB8
C
1103 1114Right-handed alpha
Helix 18
AB9
B
687 704Right-handed alpha
Helix 19
AC1
B
727 733Right-handed alpha
Helix 20
AC2
B
756 761Right-handed alpha
Helix 21
AC3
B
761 774Right-handed alpha
Helix 22
AC4
B
787 798Right-handed alpha
Helix 23
AC5
B
821 824Right-handed 310
Helix 24
AC6
B
825 836Right-handed alpha
Helix 25
AC7
B
929 937Right-handed alpha
Helix 26
AC8
B
958 969Right-handed alpha
Helix 27
AC9
B
989 1003Right-handed alpha
Helix 28
AD1
B
1024 1032Right-handed alpha
Helix 29
AD2
B
1033 1036Right-handed 310
Helix 30
AD3
B
1041 1048Right-handed alpha
Helix 31
AD4
B
1049 1051Right-handed 310
Helix 32
AD5
B
1066 1084Right-handed alpha
Helix 33
AD6
B
1103 1114Right-handed alpha
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There are 4 sheets in PDB entry 6NPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
778 785first strand
Strand 2
C
743 750parallel
Strand 3
C
716 719parallel
Strand 4
C
808 812parallel
Strand 5
C
841 846parallel
Strand 6
C
1121 1125anti-parallel
Strand 7
C
1089 1093parallel
Strand 8
C
946 952parallel
Strand 9
C
976 977parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
778 785first strand
Strand 2
C
743 750parallel
Strand 3
C
716 719parallel
Strand 4
C
808 812parallel
Strand 5
C
841 846parallel
Strand 6
C
1121 1125anti-parallel
Strand 7
C
1089 1093parallel
Strand 8
C
946 952parallel
Strand 9
C
980 983parallel
Strand 10
C
1010 1013parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
778 785first strand
Strand 2
B
743 750parallel
Strand 3
B
716 719parallel
Strand 4
B
808 812parallel
Strand 5
B
841 846parallel
Strand 6
B
1121 1125anti-parallel
Strand 7
B
1089 1093parallel
Strand 8
B
946 952parallel
Strand 9
B
976 977parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
778 785first strand
Strand 2
B
743 750parallel
Strand 3
B
716 719parallel
Strand 4
B
808 812parallel
Strand 5
B
841 846parallel
Strand 6
B
1121 1125anti-parallel
Strand 7
B
1089 1093parallel
Strand 8
B
946 952parallel
Strand 9
B
980 983parallel
Strand 10
B
1010 1013parallel
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