Analysis of interatomic Contacts of Structural Units in PDB entry:
6NPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NPK entry

There are 2 chains in PDB entry 6NPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 206LYS 677
B
 LYS 206LYS 677
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6NPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
213 222Right-handed alpha
Helix 2
AA2
A
229 237Right-handed alpha
Helix 3
AA3
A
238 265Right-handed alpha
Helix 4
AA4
A
273 282Right-handed alpha
Helix 5
AA5
A
283 318Right-handed alpha
Helix 6
AA6
A
326 349Right-handed alpha
Helix 7
AA7
A
349 377Right-handed alpha
Helix 8
AA8
A
379 383Right-handed 310
Helix 9
AA9
A
391 399Right-handed alpha
Helix 10
AB1
A
411 416Right-handed alpha
Helix 11
AB2
A
417 419Right-handed 310
Helix 12
AB3
A
421 425Right-handed 310
Helix 13
AB4
A
434 463Right-handed alpha
Helix 14
AB5
A
517 522Right-handed alpha
Helix 15
AB6
A
531 545Right-handed alpha
Helix 16
AB7
A
546 557Right-handed alpha
Helix 17
AB8
A
560 564Right-handed 310
Helix 18
AB9
A
577 592Right-handed alpha
Helix 19
AC1
A
595 625Right-handed alpha
Helix 20
AC2
A
637 656Right-handed alpha
Helix 21
AC3
A
656 676Right-handed alpha
Helix 22
AC4
B
209 222Right-handed alpha
Helix 23
AC5
B
230 237Right-handed alpha
Helix 24
AC6
B
238 265Right-handed alpha
Helix 25
AC7
B
274 282Right-handed alpha
Helix 26
AC8
B
283 320Right-handed alpha
Helix 27
AC9
B
326 349Right-handed alpha
Helix 28
AD1
B
349 377Right-handed alpha
Helix 29
AD2
B
391 399Right-handed alpha
Helix 30
AD3
B
411 416Right-handed alpha
Helix 31
AD4
B
417 419Right-handed 310
Helix 32
AD5
B
421 425Right-handed 310
Helix 33
AD6
B
434 463Right-handed alpha
Helix 34
AD7
B
516 522Right-handed alpha
Helix 35
AD8
B
530 545Right-handed alpha
Helix 36
AD9
B
546 557Right-handed alpha
Helix 37
AE1
B
560 564Right-handed 310
Helix 38
AE2
B
576 592Right-handed alpha
Helix 39
AE3
B
595 625Right-handed alpha
Helix 40
AE4
B
637 656Right-handed alpha
Helix 41
AE5
B
656 676Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6NPK.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 570first strand
Strand 2
A
575 576anti-parallel
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