Analysis of interatomic Contacts of Structural Units in PDB entry:
6NPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NPL entry

There are 2 chains in PDB entry 6NPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 206SER 1136
B
 LYS 206SER 1136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 6NPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
208 213Right-handed alpha
Helix 2
AA2
A
213 222Right-handed alpha
Helix 3
AA3
A
229 237Right-handed alpha
Helix 4
AA4
A
238 265Right-handed alpha
Helix 5
AA5
A
273 282Right-handed alpha
Helix 6
AA6
A
283 319Right-handed alpha
Helix 7
AA7
A
326 349Right-handed alpha
Helix 8
AA8
A
349 375Right-handed alpha
Helix 9
AA9
A
391 398Right-handed alpha
Helix 10
AB1
A
411 416Right-handed alpha
Helix 11
AB2
A
417 419Right-handed 310
Helix 12
AB3
A
421 425Right-handed 310
Helix 13
AB4
A
434 463Right-handed alpha
Helix 14
AB5
A
516 522Right-handed alpha
Helix 15
AB6
A
531 545Right-handed alpha
Helix 16
AB7
A
546 555Right-handed alpha
Helix 17
AB8
A
561 566Right-handed 310
Helix 18
AB9
A
576 592Right-handed alpha
Helix 19
AC1
A
595 625Right-handed alpha
Helix 20
AC2
A
637 656Right-handed alpha
Helix 21
AC3
A
656 676Right-handed alpha
Helix 22
AC4
A
688 703Right-handed alpha
Helix 23
AC5
A
726 736Right-handed alpha
Helix 24
AC6
A
759 774Right-handed alpha
Helix 25
AC7
A
787 797Right-handed alpha
Helix 26
AC8
A
824 836Right-handed alpha
Helix 27
AC9
A
927 936Right-handed alpha
Helix 28
AD1
A
958 969Right-handed alpha
Helix 29
AD2
A
991 1003Right-handed alpha
Helix 30
AD3
A
1021 1030Right-handed alpha
Helix 31
AD4
A
1041 1049Right-handed alpha
Helix 32
AD5
A
1066 1084Right-handed alpha
Helix 33
AD6
A
1103 1115Right-handed alpha
Helix 34
AD7
B
208 222Right-handed alpha
Helix 35
AD8
B
230 237Right-handed alpha
Helix 36
AD9
B
238 265Right-handed alpha
Helix 37
AE1
B
274 282Right-handed alpha
Helix 38
AE2
B
283 319Right-handed alpha
Helix 39
AE3
B
326 349Right-handed alpha
Helix 40
AE4
B
352 375Right-handed alpha
Helix 41
AE5
B
391 398Right-handed alpha
Helix 42
AE6
B
411 416Right-handed alpha
Helix 43
AE7
B
417 419Right-handed 310
Helix 44
AE8
B
421 425Right-handed 310
Helix 45
AE9
B
434 463Right-handed alpha
Helix 46
AF1
B
516 522Right-handed alpha
Helix 47
AF2
B
531 545Right-handed alpha
Helix 48
AF3
B
546 555Right-handed alpha
Helix 49
AF4
B
561 566Right-handed 310
Helix 50
AF5
B
576 592Right-handed alpha
Helix 51
AF6
B
595 624Right-handed alpha
Helix 52
AF7
B
637 656Right-handed alpha
Helix 53
AF8
B
656 676Right-handed alpha
Helix 54
AF9
B
688 704Right-handed alpha
Helix 55
AG1
B
726 736Right-handed alpha
Helix 56
AG2
B
759 774Right-handed alpha
Helix 57
AG3
B
787 797Right-handed alpha
Helix 58
AG4
B
821 823Right-handed 310
Helix 59
AG5
B
824 836Right-handed alpha
Helix 60
AG6
B
837 839Right-handed 310
Helix 61
AG7
B
927 937Right-handed alpha
Helix 62
AG8
B
958 969Right-handed alpha
Helix 63
AG9
B
991 1003Right-handed alpha
Helix 64
AH1
B
1024 1032Right-handed alpha
Helix 65
AH2
B
1033 1036Right-handed 310
Helix 66
AH3
B
1041 1052Right-handed alpha
Helix 67
AH4
B
1066 1084Right-handed alpha
Helix 68
AH5
B
1103 1114Right-handed alpha
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There are 2 sheets in PDB entry 6NPL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
778 784first strand
Strand 2
A
743 749parallel
Strand 3
A
716 719parallel
Strand 4
A
808 812parallel
Strand 5
A
841 845parallel
Strand 6
A
1121 1125anti-parallel
Strand 7
A
1090 1093parallel
Strand 8
A
949 952parallel
Strand 9
A
981 983parallel
Strand 10
A
1011 1013parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
778 784first strand
Strand 2
B
742 749parallel
Strand 3
B
715 719parallel
Strand 4
B
808 812parallel
Strand 5
B
841 846parallel
Strand 6
B
1121 1125anti-parallel
Strand 7
B
1089 1093parallel
Strand 8
B
945 952parallel
Strand 9
B
975 983parallel
Strand 10
B
1010 1013parallel
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