Analysis of interatomic Contacts of Structural Units in PDB entry:
6NPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NPM entry

There are 2 chains in PDB entry 6NPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 467PRO 607
B
 SER 474PRO 607
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6NPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
476 490Right-handed alpha
Helix 2
AA2
A
513 528Right-handed alpha
Helix 3
AA3
A
551 554Right-handed 310
Helix 4
AA4
A
568 584Right-handed alpha
Helix 5
AA5
A
589 591Right-handed 310
Helix 6
AA6
B
475 490Right-handed alpha
Helix 7
AA7
B
513 528Right-handed alpha
Helix 8
AA8
B
568 584Right-handed alpha
Helix 9
AA9
B
589 591Right-handed 310
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There are 2 sheets in PDB entry 6NPM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 533first strand
Strand 2
A
556 566anti-parallel
Strand 3
A
503 511anti-parallel
Strand 4
A
593 604anti-parallel
Strand 5
B
593 604anti-parallel
Strand 6
B
503 511anti-parallel
Strand 7
B
556 566anti-parallel
Strand 8
B
532 533anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 540first strand
Strand 2
A
556 566anti-parallel
Strand 3
A
503 511anti-parallel
Strand 4
A
593 604anti-parallel
Strand 5
B
593 604anti-parallel
Strand 6
B
503 511anti-parallel
Strand 7
B
556 566anti-parallel
Strand 8
B
537 540anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il