Analysis of interatomic Contacts of Structural Units in PDB entry:
6NPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NPY entry

There are 2 chains in PDB entry 6NPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 113ALA 300
A
 TYR 136SER 1035
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6NPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
118 129Right-handed alpha
Helix 2
AA2
B
134 154Right-handed alpha
Helix 3
AA3
B
190 196Right-handed 310
Helix 4
AA4
B
204 209Right-handed alpha
Helix 5
AA5
B
214 232Right-handed alpha
Helix 6
AA6
B
242 253Right-handed alpha
Helix 7
AA7
B
264 275Right-handed alpha
Helix 8
AA8
B
284 298Right-handed alpha
Helix 9
AA9
A
137 148Right-handed alpha
Helix 10
AB1
A
164 168Right-handed 310
Helix 11
AB2
A
231 245Right-handed alpha
Helix 12
AB3
A
262 264Right-handed 310
Helix 13
AB4
A
273 278Right-handed alpha
Helix 14
AB5
A
289 293Right-handed 310
Helix 15
AB6
A
304 307Right-handed 310
Helix 16
AB7
A
327 337Right-handed alpha
Helix 17
AB8
A
351 357Right-handed 310
Helix 18
AB9
A
358 363Right-handed alpha
Helix 19
AC1
A
374 386Right-handed alpha
Helix 20
AC2
A
388 401Right-handed alpha
Helix 21
AC3
A
402 409Right-handed alpha
Helix 22
AC4
A
411 429Right-handed alpha
Helix 23
AC5
A
438 452Right-handed alpha
Helix 24
AC6
A
463 479Right-handed alpha
Helix 25
AC7
A
485 492Right-handed alpha
Helix 26
AC8
A
496 505Right-handed alpha
Helix 27
AC9
A
522 535Right-handed alpha
Helix 28
AD1
A
558 564Right-handed alpha
Helix 29
AD2
A
567 572Right-handed 310
Helix 30
AD3
A
573 584Right-handed alpha
Helix 31
AD4
A
597 617Right-handed alpha
Helix 32
AD5
A
628 636Right-handed alpha
Helix 33
AD6
A
639 648Right-handed alpha
Helix 34
AD7
A
659 672Right-handed alpha
Helix 35
AD8
A
731 740Right-handed alpha
Helix 36
AD9
A
754 766Right-handed alpha
Helix 37
AE1
A
784 797Right-handed alpha
Helix 38
AE2
A
811 824Right-handed alpha
Helix 39
AE3
A
840 854Right-handed alpha
Helix 40
AE4
A
868 880Right-handed alpha
Helix 41
AE5
A
898 911Right-handed alpha
Helix 42
AE6
A
924 937Right-handed alpha
Helix 43
AE7
A
954 956Right-handed 310
Helix 44
AE8
A
957 968Right-handed alpha
Helix 45
AE9
A
982 994Right-handed alpha
Helix 46
AF1
A
1011 1025Right-handed alpha
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There are 5 sheets in PDB entry 6NPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 169first strand
Strand 2
B
175 177anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
367 371anti-parallel
Strand 3
A
221 225parallel
Strand 4
A
345 350parallel
Strand 5
A
297 302parallel
Strand 6
A
255 260parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 509first strand
Strand 2
A
519 520anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
654 655first strand
Strand 2
A
678 681parallel
Strand 3
A
745 747parallel
Strand 4
A
774 776parallel
Strand 5
A
802 804parallel
Strand 6
A
831 833parallel
Strand 7
A
859 861parallel
Strand 8
A
888 889parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
916 918first strand
Strand 2
A
945 948parallel
Strand 3
A
973 976parallel
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