Analysis of interatomic Contacts of Structural Units in PDB entry:
6NPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NPY entry

There are 2 chains in PDB entry 6NPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 133TRP 1034
B
LEU 113ALA 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6NPY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
134 148Right-handed alpha
Helix 2
AA2
A
229 243Right-handed alpha
Helix 3
AA3
A
286 291Right-handed alpha
Helix 4
AA4
A
301 305Right-handed 310
Helix 5
AA5
A
331 338Right-handed alpha
Helix 6
AA6
A
352 358Right-handed alpha
Helix 7
AA7
A
372 384Right-handed alpha
Helix 8
AA8
A
391 399Right-handed alpha
Helix 9
AA9
A
405 408Right-handed 310
Helix 10
AB1
A
409 418Right-handed alpha
Helix 11
AB2
A
436 449Right-handed alpha
Helix 12
AB3
A
460 472Right-handed alpha
Helix 13
AB4
A
472 477Right-handed alpha
Helix 14
AB5
A
485 491Right-handed alpha
Helix 15
AB6
A
494 505Right-handed alpha
Helix 16
AB7
A
508 512Right-handed 310
Helix 17
AB8
A
521 535Right-handed alpha
Helix 18
AB9
A
544 551Right-handed alpha
Helix 19
AC1
A
552 554Right-handed 310
Helix 20
AC2
A
562 577Right-handed alpha
Helix 21
AC3
A
582 586Right-handed 310
Helix 22
AC4
A
617 634Right-handed alpha
Helix 23
AC5
A
646 651Right-handed alpha
Helix 24
AC6
A
685 690Right-handed 310
Helix 25
AC7
A
704 712Right-handed alpha
Helix 26
AC8
A
728 737Right-handed alpha
Helix 27
AC9
A
752 757Right-handed alpha
Helix 28
AD1
A
759 764Right-handed alpha
Helix 29
AD2
A
783 794Right-handed alpha
Helix 30
AD3
A
811 823Right-handed alpha
Helix 31
AD4
A
841 852Right-handed alpha
Helix 32
AD5
A
869 876Right-handed alpha
Helix 33
AD6
A
894 909Right-handed alpha
Helix 34
AD7
A
923 935Right-handed alpha
Helix 35
AD8
A
954 966Right-handed alpha
Helix 36
AD9
A
979 993Right-handed alpha
Helix 37
AE1
A
1009 1019Right-handed alpha
Helix 38
AE2
B
119 130Right-handed alpha
Helix 39
AE3
B
134 155Right-handed alpha
Helix 40
AE4
B
163 166Right-handed 310
Helix 41
AE5
B
204 209Right-handed alpha
Helix 42
AE6
B
214 232Right-handed alpha
Helix 43
AE7
B
243 253Right-handed alpha
Helix 44
AE8
B
264 275Right-handed alpha
Helix 45
AE9
B
278 282Right-handed 310
Helix 46
AF1
B
284 298Right-handed alpha
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There are 4 sheets in PDB entry 6NPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
170 172first strand
Strand 2
A
364 369anti-parallel
Strand 3
A
219 223parallel
Strand 4
A
343 348parallel
Strand 5
A
295 300parallel
Strand 6
A
253 258parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
744 745first strand
Strand 2
A
773 776parallel
Strand 3
A
800 804parallel
Strand 4
A
829 831parallel
Strand 5
A
857 859parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
915 916first strand
Strand 2
A
944 945parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
117 118first strand
Strand 2
B
168 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il