Analysis of interatomic Contacts of Structural Units in PDB entry:
6NPZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NPZ entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 11 chains in PDB entry 6NPZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 142LYS 307
A
 PHE 309PHE 472
A
 TYR 474ALA 476
A
 GLY 478GLY 478
B
 PRO 141LYS 307
B
 PHE 309PHE 472
B
 TYR 474ALA 476
F
 GLY 1THR 6
F
 PHE 8GLU 10
G
 GLY 1THR 6
G
 PHE 8GLU 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6NPZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 148Right-handed 310
Helix 2
AA2
A
183 189Right-handed alpha
Helix 3
AA3
A
191 204Right-handed alpha
Helix 4
AA4
A
235 243Right-handed alpha
Helix 5
AA5
A
246 269Right-handed alpha
Helix 6
AA6
A
276 278Right-handed 310
Helix 7
AA7
A
312 316Right-handed 310
Helix 8
AA8
A
317 323Right-handed alpha
Helix 9
AA9
A
329 345Right-handed alpha
Helix 10
AB1
A
353 364Right-handed alpha
Helix 11
AB2
A
373 384Right-handed alpha
Helix 12
AB3
A
387 391Right-handed 310
Helix 13
AB4
A
398 404Right-handed alpha
Helix 14
AB5
A
405 409Right-handed 310
Helix 15
AB6
A
412 418Right-handed alpha
Helix 16
AB7
A
439 444Right-handed alpha
Helix 17
AB8
B
146 148Right-handed 310
Helix 18
AB9
B
183 189Right-handed alpha
Helix 19
AC1
B
191 204Right-handed alpha
Helix 20
AC2
B
234 243Right-handed alpha
Helix 21
AC3
B
246 269Right-handed alpha
Helix 22
AC4
B
276 278Right-handed 310
Helix 23
AC5
B
312 316Right-handed 310
Helix 24
AC6
B
317 323Right-handed alpha
Helix 25
AC7
B
329 345Right-handed alpha
Helix 26
AC8
B
353 364Right-handed alpha
Helix 27
AC9
B
373 384Right-handed alpha
Helix 28
AD1
B
387 391Right-handed 310
Helix 29
AD2
B
398 404Right-handed alpha
Helix 30
AD3
B
405 409Right-handed 310
Helix 31
AD4
B
412 418Right-handed alpha
Helix 32
AD5
B
439 444Right-handed alpha
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There are 6 sheets in PDB entry 6NPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 158first strand
Strand 2
A
162 169anti-parallel
Strand 3
A
175 182anti-parallel
Strand 4
A
222 227anti-parallel
Strand 5
A
213 218anti-parallel
Strand 6
A
474 475anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
280 282anti-parallel
Strand 3
A
288 290anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
F
8 10anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 158first strand
Strand 2
B
162 169anti-parallel
Strand 3
B
175 182anti-parallel
Strand 4
B
222 227anti-parallel
Strand 5
B
213 218anti-parallel
Strand 6
B
474 475anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 282first strand
Strand 2
B
288 290anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
G
8 9anti-parallel
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