Analysis of interatomic Contacts of Structural Units in PDB entry:
6NQ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NQ3 entry

There are 6 chains in PDB entry 6NQ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 7	GLU 412
B	VAL 79	PRO 533
C	ASP 528	TYR 580
D	LYS 149	GLY 165
E	ALA 7	ASP 411
F	ALA 81	SER 242

There are 29 helices in PDB entry 6NQ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	31	Right-handed alpha
Helix 2	AA2	A	155	157	Right-handed 310
Helix 3	AA3	A	348	350	Right-handed 310
Helix 4	AA4	A	355	362	Right-handed alpha
Helix 5	AA5	A	405	410	Right-handed alpha
Helix 6	AA6	B	79	81	Right-handed 310
Helix 7	AA7	B	82	107	Right-handed alpha
Helix 8	AA8	B	111	122	Right-handed 310
Helix 9	AA9	B	127	132	Right-handed alpha
Helix 10	AB1	B	135	143	Right-handed alpha
Helix 11	AB2	B	233	237	Right-handed 310
Helix 12	AB3	B	459	471	Right-handed alpha
Helix 13	AB4	B	505	509	Right-handed 310
Helix 14	AB5	C	530	544	Right-handed alpha
Helix 15	AB6	C	544	552	Right-handed alpha
Helix 16	AB7	D	153	164	Right-handed alpha
Helix 17	AB8	E	9	28	Right-handed alpha
Helix 18	AB9	E	355	362	Right-handed alpha
Helix 19	AC1	E	405	410	Right-handed alpha
Helix 20	AC2	F	82	107	Right-handed alpha
Helix 21	AC3	F	111	122	Right-handed 310
Helix 22	AC4	F	127	132	Right-handed alpha
Helix 23	AC5	F	136	146	Right-handed alpha
Helix 24	AC6	F	233	237	Right-handed 310
Helix 25	AC7	F	459	471	Right-handed alpha
Helix 26	AC8	F	493	496	Right-handed 310
Helix 27	AC9	G	531	544	Right-handed alpha
Helix 28	AD1	G	545	552	Right-handed alpha
Helix 29	AD2	H	153	164	Right-handed alpha

There are 24 sheets in PDB entry 6NQ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	382	first strand
Strand 2	A	389	394	anti-parallel
Strand 3	A	398	404	anti-parallel
Strand 4	A	32	39	anti-parallel
Strand 5	B	525	531	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	54	first strand
Strand 2	A	61	69	anti-parallel
Strand 3	A	77	87	anti-parallel
Strand 4	A	115	123	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	139	143	anti-parallel
Strand 3	A	149	153	anti-parallel
Strand 4	A	171	173	anti-parallel
Strand 5	A	216	217	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	202	206	anti-parallel
Strand 4	A	221	223	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	235	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	251	256	anti-parallel
Strand 4	A	267	270	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	281	first strand
Strand 2	A	288	293	anti-parallel
Strand 3	A	297	302	anti-parallel
Strand 4	A	311	314	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	325	first strand
Strand 2	A	332	337	anti-parallel
Strand 3	A	342	346	anti-parallel
Strand 4	A	366	370	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	157	160	anti-parallel
Strand 3	B	354	358	anti-parallel
Strand 4	B	313	316	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	185	193	anti-parallel
Strand 3	B	204	205	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	185	193	anti-parallel
Strand 3	B	245	253	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	441	first strand
Strand 2	B	427	434	anti-parallel
Strand 3	B	484	491	parallel
Strand 4	B	474	481	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	555	563	first strand
Strand 2	C	567	574	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	377	382	first strand
Strand 2	E	389	394	anti-parallel
Strand 3	E	398	404	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	F	525	531	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	54	first strand
Strand 2	E	61	69	anti-parallel
Strand 3	E	77	87	anti-parallel
Strand 4	E	115	123	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	133	first strand
Strand 2	E	136	143	anti-parallel
Strand 3	E	149	153	anti-parallel
Strand 4	E	171	174	anti-parallel
Strand 5	E	216	218	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	182	185	first strand
Strand 2	E	192	196	anti-parallel
Strand 3	E	202	206	anti-parallel
Strand 4	E	221	223	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	235	first strand
Strand 2	E	242	247	anti-parallel
Strand 3	E	251	256	anti-parallel
Strand 4	E	267	270	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	276	281	first strand
Strand 2	E	288	293	anti-parallel
Strand 3	E	297	302	anti-parallel
Strand 4	E	311	314	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	320	325	first strand
Strand 2	E	332	337	anti-parallel
Strand 3	E	342	346	anti-parallel
Strand 4	E	366	370	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	161	first strand
Strand 2	F	354	358	anti-parallel
Strand 3	F	313	316	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	200	first strand
Strand 2	F	186	193	anti-parallel
Strand 3	F	204	205	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	200	first strand
Strand 2	F	186	193	anti-parallel
Strand 3	F	245	252	anti-parallel
Strand 4	F	297	300	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	438	441	first strand
Strand 2	F	428	433	anti-parallel
Strand 3	F	484	491	parallel
Strand 4	F	474	481	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	557	562	first strand
Strand 2	G	568	572	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NQ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NQ3