Analysis of interatomic Contacts of Structural Units in PDB entry:
6NQ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NQ4 entry

There are 2 chains in PDB entry 6NQ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4VAL 283
B
 ILE 3VAL 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6NQ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed 310
Helix 2
AA2
A
33 46Right-handed alpha
Helix 3
AA3
A
59 70Right-handed alpha
Helix 4
AA4
A
73 77Right-handed 310
Helix 5
AA5
A
83 94Right-handed alpha
Helix 6
AA6
A
104 111Right-handed 310
Helix 7
AA7
A
119 123Right-handed 310
Helix 8
AA8
A
138 141Right-handed 310
Helix 9
AA9
A
142 152Right-handed alpha
Helix 10
AB1
A
174 185Right-handed alpha
Helix 11
AB2
A
196 212Right-handed alpha
Helix 12
AB3
A
216 218Right-handed 310
Helix 13
AB4
A
229 238Right-handed alpha
Helix 14
AB5
A
249 253Right-handed 310
Helix 15
AB6
B
7 12Right-handed alpha
Helix 16
AB7
B
13 15Right-handed 310
Helix 17
AB8
B
33 46Right-handed alpha
Helix 18
AB9
B
59 70Right-handed alpha
Helix 19
AC1
B
73 77Right-handed 310
Helix 20
AC2
B
83 94Right-handed alpha
Helix 21
AC3
B
104 111Right-handed 310
Helix 22
AC4
B
119 123Right-handed 310
Helix 23
AC5
B
138 141Right-handed 310
Helix 24
AC6
B
142 152Right-handed alpha
Helix 25
AC7
B
174 185Right-handed alpha
Helix 26
AC8
B
196 212Right-handed alpha
Helix 27
AC9
B
216 218Right-handed 310
Helix 28
AD1
B
229 238Right-handed alpha
Helix 29
AD2
B
249 253Right-handed 310
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There are 6 sheets in PDB entry 6NQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
49 54parallel
Strand 3
A
17 20parallel
Strand 4
A
220 224parallel
Strand 5
A
240 244parallel
Strand 6
A
277 279parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
97 101parallel
Strand 3
A
125 128parallel
Strand 4
A
156 158parallel
Strand 5
A
189 191parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
170 173anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
49 54parallel
Strand 3
B
17 20parallel
Strand 4
B
220 224parallel
Strand 5
B
240 243parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
97 101parallel
Strand 3
B
125 128parallel
Strand 4
B
156 158parallel
Strand 5
B
189 191parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 167first strand
Strand 2
B
170 173anti-parallel
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