Analysis of interatomic Contacts of Structural Units in PDB entry:
6NQB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NQB entry

There are 16 chains in PDB entry 6NQB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 1	ILE 206
J	ARG 5	LEU 102
N	ALA 1	TRP 100
S	GLY 7	ARG 80
A	U 5	A 1396
D	ALA 1	LYS 205
E	GLU 9	GLY 157
F	MET 1	LYS 93
H	SER 1	ALA 129
L	ALA 1	ALA 123
O	LEU 2	ARG 87
P	MET 1	ASN 79
Q	LYS 3	ALA 81
R	TYR 22	HIS 73
T	ASN 2	ALA 86
B	LEU 9	SER 225

There are 59 helices in PDB entry 6NQB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	27	40	Right-handed alpha
Helix 2	AA2	C	71	76	Right-handed alpha
Helix 3	AA3	C	84	93	Right-handed alpha
Helix 4	AA4	C	111	125	Right-handed alpha
Helix 5	AA5	C	128	143	Right-handed alpha
Helix 6	AA6	J	18	21	Right-handed 310
Helix 7	AA7	J	22	27	Right-handed alpha
Helix 8	AA8	N	4	18	Right-handed alpha
Helix 9	AA9	N	24	28	Right-handed 310
Helix 10	AB1	N	41	49	Right-handed alpha
Helix 11	AB2	N	79	89	Right-handed alpha
Helix 12	AB3	S	11	16	Right-handed alpha
Helix 13	AB4	S	40	44	Right-handed 310
Helix 14	AB5	S	69	73	Right-handed 310
Helix 15	AB6	D	8	14	Right-handed alpha
Helix 16	AB7	D	24	28	Right-handed 310
Helix 17	AB8	D	48	61	Right-handed alpha
Helix 18	AB9	D	67	81	Right-handed alpha
Helix 19	AC1	D	84	95	Right-handed alpha
Helix 20	AC2	D	96	104	Right-handed alpha
Helix 21	AC3	D	109	119	Right-handed alpha
Helix 22	AC4	D	146	149	Right-handed 310
Helix 23	AC5	D	157	164	Right-handed alpha
Helix 24	AC6	D	196	204	Right-handed alpha
Helix 25	AC7	E	55	67	Right-handed alpha
Helix 26	AC8	E	108	118	Right-handed alpha
Helix 27	AC9	E	131	145	Right-handed alpha
Helix 28	AD1	E	148	157	Right-handed alpha
Helix 29	AD2	F	14	16	Right-handed 310
Helix 30	AD3	F	17	25	Right-handed alpha
Helix 31	AD4	F	26	31	Right-handed alpha
Helix 32	AD5	F	71	76	Right-handed alpha
Helix 33	AD6	H	6	15	Right-handed alpha
Helix 34	AD7	H	29	40	Right-handed alpha
Helix 35	AD8	H	87	91	Right-handed 310
Helix 36	AD9	H	112	116	Right-handed 310
Helix 37	AE1	L	2	7	Right-handed alpha
Helix 38	AE2	O	4	9	Right-handed alpha
Helix 39	AE3	O	23	42	Right-handed alpha
Helix 40	AE4	O	51	73	Right-handed alpha
Helix 41	AE5	O	73	85	Right-handed alpha
Helix 42	AE6	P	53	64	Right-handed alpha
Helix 43	AE7	P	68	78	Right-handed alpha
Helix 44	AE8	R	24	30	Right-handed alpha
Helix 45	AE9	R	40	45	Right-handed alpha
Helix 46	AF1	R	51	60	Right-handed alpha
Helix 47	AF2	R	61	64	Right-handed 310
Helix 48	AF3	T	6	41	Right-handed alpha
Helix 49	AF4	T	43	60	Right-handed alpha
Helix 50	AF5	T	73	86	Right-handed alpha
Helix 51	AF6	B	52	61	Right-handed alpha
Helix 52	AF7	B	102	112	Right-handed alpha
Helix 53	AF8	B	117	122	Right-handed alpha
Helix 54	AF9	B	131	136	Right-handed alpha
Helix 55	AG1	B	136	147	Right-handed alpha
Helix 56	AG2	B	148	151	Right-handed 310
Helix 57	AG3	B	168	176	Right-handed alpha
Helix 58	AG4	B	177	179	Right-handed 310
Helix 59	AG5	B	205	217	Right-handed alpha

There are 18 sheets in PDB entry 6NQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	55	first strand
Strand 2	C	64	69	anti-parallel
Strand 3	C	99	104	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	148	152	anti-parallel
Strand 3	C	195	201	anti-parallel
Strand 4	C	186	188	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	12	first strand
Strand 2	J	68	76	anti-parallel
Strand 3	J	44	46	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	66	first strand
Strand 2	N	96	97	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	50	51	first strand
Strand 2	S	56	57	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	122	124	anti-parallel
Strand 3	D	142	144	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	172	first strand
Strand 2	D	179	181	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	14	first strand
Strand 2	E	32	39	anti-parallel
Strand 3	E	45	52	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	87	first strand
Strand 2	E	92	97	anti-parallel
Strand 3	E	122	126	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	8	first strand
Strand 2	F	87	90	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	24	first strand
Strand 2	H	57	61	anti-parallel
Strand 3	H	47	51	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	104	first strand
Strand 2	H	123	128	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	31	first strand
Strand 2	L	79	80	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	51	55	first strand
Strand 2	L	61	65	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	18	21	first strand
Strand 2	P	34	39	anti-parallel
Strand 3	P	50	51	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	7	10	first strand
Strand 2	Q	57	62	anti-parallel
Strand 3	Q	70	77	anti-parallel
Strand 4	Q	39	46	parallel
Strand 5	Q	19	26	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	38	40	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	67	69	parallel
Strand 3	B	161	162	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NQB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NQB