Analysis of interatomic Contacts of Structural Units in PDB entry:
6NQC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NQC entry

There is 1 chain in PDB entry 6NQC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -5PHE 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6NQC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 16Right-handed 310
Helix 2
AA2
A
17 31Right-handed alpha
Helix 3
AA3
A
41 45Right-handed 310
Helix 4
AA4
A
48 67Right-handed alpha
Helix 5
AA5
A
77 82Right-handed 310
Helix 6
AA6
A
83 90Right-handed alpha
Helix 7
AA7
A
102 111Right-handed alpha
Helix 8
AA8
A
113 125Right-handed alpha
Helix 9
AA9
A
133 138Right-handed alpha
Helix 10
AB1
A
171 175Right-handed 310
Helix 11
AB2
A
177 185Right-handed alpha
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There are 3 sheets in PDB entry 6NQC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
36 40parallel
Strand 3
A
95 98parallel
Strand 4
A
128 132parallel
Strand 5
A
5 8parallel
Strand 6
A
200 204anti-parallel
Strand 7
A
211 215anti-parallel
Strand 8
A
235 236anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
154 155anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
192 196parallel
Strand 3
A
219 223anti-parallel
Strand 4
A
228 230anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il