Analysis of interatomic Contacts of Structural Units in PDB entry:
6NQI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NQI entry

There are 2 chains in PDB entry 6NQI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1851GLN 2059
B
 LEU 1853LEU 2058
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6NQI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1891 1896Right-handed 310
Helix 2
AA2
A
1900 1919Right-handed alpha
Helix 3
AA3
A
1921 1925Right-handed 310
Helix 4
AA4
A
1933 1935Right-handed 310
Helix 5
AA5
A
1936 1945Right-handed alpha
Helix 6
AA6
A
1957 1961Right-handed 310
Helix 7
AA7
A
1962 1968Right-handed 310
Helix 8
AA8
A
1969 1978Right-handed alpha
Helix 9
AA9
A
1992 1996Right-handed 310
Helix 10
AB1
A
1998 2016Right-handed alpha
Helix 11
AB2
A
2016 2024Right-handed alpha
Helix 12
AB3
A
2047 2058Right-handed alpha
Helix 13
AB4
B
1891 1896Right-handed 310
Helix 14
AB5
B
1903 1919Right-handed alpha
Helix 15
AB6
B
1921 1925Right-handed 310
Helix 16
AB7
B
1933 1935Right-handed 310
Helix 17
AB8
B
1936 1945Right-handed alpha
Helix 18
AB9
B
1962 1968Right-handed 310
Helix 19
AC1
B
1969 1978Right-handed alpha
Helix 20
AC2
B
1992 1996Right-handed 310
Helix 21
AC3
B
1998 2016Right-handed alpha
Helix 22
AC4
B
2016 2024Right-handed alpha
Helix 23
AC5
B
2047 2058Right-handed alpha
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There are 2 sheets in PDB entry 6NQI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1954 1955first strand
Strand 2
A
1928 1931parallel
Strand 3
A
1858 1868parallel
Strand 4
A
1871 1879anti-parallel
Strand 5
A
1884 1890anti-parallel
Strand 6
A
1984 1988anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1954 1956first strand
Strand 2
B
1928 1931parallel
Strand 3
B
1858 1862parallel
Strand 4
B
1873 1879anti-parallel
Strand 5
B
1884 1890anti-parallel
Strand 6
B
1984 1988anti-parallel
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