Analysis of interatomic Contacts of Structural Units in PDB entry:
6NQT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NQT entry

There are 6 chains in PDB entry 6NQT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 75	LEU 569
B	VAL 76	LEU 569
C	LYS 75	LEU 569
D	LYS 75	LEU 569
E	LYS 75	LEU 569
F	ASN 82	LEU 569

There are114 helices in PDB entry 6NQT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	81	Right-handed 310
Helix 2	AA2	A	105	112	Right-handed alpha
Helix 3	AA3	A	148	163	Right-handed alpha
Helix 4	AA4	A	164	166	Right-handed 310
Helix 5	AA5	A	181	186	Right-handed alpha
Helix 6	AA6	A	187	190	Right-handed 310
Helix 7	AA7	A	203	214	Right-handed alpha
Helix 8	AA8	A	233	244	Right-handed alpha
Helix 9	AA9	A	286	293	Right-handed alpha
Helix 10	AB1	A	315	321	Right-handed alpha
Helix 11	AB2	A	333	345	Right-handed alpha
Helix 12	AB3	A	372	389	Right-handed alpha
Helix 13	AB4	A	392	400	Right-handed alpha
Helix 14	AB5	A	401	406	Right-handed 310
Helix 15	AB6	A	411	421	Right-handed alpha
Helix 16	AB7	A	425	433	Right-handed alpha
Helix 17	AB8	A	544	548	Right-handed 310
Helix 18	AB9	A	558	562	Right-handed 310
Helix 19	AC1	B	77	81	Right-handed 310
Helix 20	AC2	B	82	88	Right-handed alpha
Helix 21	AC3	B	105	112	Right-handed alpha
Helix 22	AC4	B	123	128	Right-handed alpha
Helix 23	AC5	B	148	163	Right-handed alpha
Helix 24	AC6	B	164	166	Right-handed 310
Helix 25	AC7	B	181	186	Right-handed alpha
Helix 26	AC8	B	187	190	Right-handed 310
Helix 27	AC9	B	202	214	Right-handed alpha
Helix 28	AD1	B	233	244	Right-handed alpha
Helix 29	AD2	B	286	293	Right-handed alpha
Helix 30	AD3	B	315	321	Right-handed alpha
Helix 31	AD4	B	333	345	Right-handed alpha
Helix 32	AD5	B	372	389	Right-handed alpha
Helix 33	AD6	B	392	400	Right-handed alpha
Helix 34	AD7	B	401	406	Right-handed 310
Helix 35	AD8	B	411	421	Right-handed alpha
Helix 36	AD9	B	425	432	Right-handed alpha
Helix 37	AE1	B	517	520	Right-handed 310
Helix 38	AE2	B	544	548	Right-handed 310
Helix 39	AE3	C	77	81	Right-handed 310
Helix 40	AE4	C	82	87	Right-handed alpha
Helix 41	AE5	C	97	103	Right-handed alpha
Helix 42	AE6	C	105	112	Right-handed alpha
Helix 43	AE7	C	148	162	Right-handed alpha
Helix 44	AE8	C	164	166	Right-handed 310
Helix 45	AE9	C	181	186	Right-handed alpha
Helix 46	AF1	C	187	190	Right-handed 310
Helix 47	AF2	C	203	214	Right-handed alpha
Helix 48	AF3	C	233	244	Right-handed alpha
Helix 49	AF4	C	286	293	Right-handed alpha
Helix 50	AF5	C	315	321	Right-handed alpha
Helix 51	AF6	C	333	345	Right-handed alpha
Helix 52	AF7	C	373	389	Right-handed alpha
Helix 53	AF8	C	392	400	Right-handed alpha
Helix 54	AF9	C	401	405	Right-handed 310
Helix 55	AG1	C	411	421	Right-handed alpha
Helix 56	AG2	C	425	433	Right-handed alpha
Helix 57	AG3	C	477	481	Right-handed 310
Helix 58	AG4	C	517	520	Right-handed 310
Helix 59	AG5	D	77	81	Right-handed 310
Helix 60	AG6	D	82	89	Right-handed alpha
Helix 61	AG7	D	105	112	Right-handed alpha
Helix 62	AG8	D	123	129	Right-handed alpha
Helix 63	AG9	D	148	163	Right-handed alpha
Helix 64	AH1	D	164	166	Right-handed 310
Helix 65	AH2	D	181	186	Right-handed alpha
Helix 66	AH3	D	187	190	Right-handed 310
Helix 67	AH4	D	203	214	Right-handed alpha
Helix 68	AH5	D	233	244	Right-handed alpha
Helix 69	AH6	D	286	295	Right-handed alpha
Helix 70	AH7	D	315	321	Right-handed alpha
Helix 71	AH8	D	333	345	Right-handed alpha
Helix 72	AH9	D	373	389	Right-handed alpha
Helix 73	AI1	D	394	400	Right-handed alpha
Helix 74	AI2	D	401	406	Right-handed 310
Helix 75	AI3	D	411	421	Right-handed alpha
Helix 76	AI4	D	425	433	Right-handed alpha
Helix 77	AI5	D	477	481	Right-handed 310
Helix 78	AI6	D	517	520	Right-handed 310
Helix 79	AI7	D	558	562	Right-handed 310
Helix 80	AI8	E	77	81	Right-handed 310
Helix 81	AI9	E	98	103	Right-handed alpha
Helix 82	AJ1	E	106	112	Right-handed alpha
Helix 83	AJ2	E	123	127	Right-handed 310
Helix 84	AJ3	E	148	163	Right-handed alpha
Helix 85	AJ4	E	164	166	Right-handed 310
Helix 86	AJ5	E	181	186	Right-handed alpha
Helix 87	AJ6	E	187	190	Right-handed 310
Helix 88	AJ7	E	203	214	Right-handed alpha
Helix 89	AJ8	E	233	243	Right-handed alpha
Helix 90	AJ9	E	286	295	Right-handed alpha
Helix 91	AK1	E	315	321	Right-handed alpha
Helix 92	AK2	E	333	345	Right-handed alpha
Helix 93	AK3	E	373	389	Right-handed alpha
Helix 94	AK4	E	392	400	Right-handed alpha
Helix 95	AK5	E	401	406	Right-handed 310
Helix 96	AK6	E	411	421	Right-handed alpha
Helix 97	AK7	E	425	433	Right-handed alpha
Helix 98	AK8	E	517	520	Right-handed 310
Helix 99	AK9	E	558	562	Right-handed 310
Helix 100	AL1	F	105	112	Right-handed alpha
Helix 101	AL2	F	150	163	Right-handed alpha
Helix 102	AL3	F	164	166	Right-handed 310
Helix 103	AL4	F	181	186	Right-handed alpha
Helix 104	AL5	F	203	214	Right-handed alpha
Helix 105	AL6	F	233	244	Right-handed alpha
Helix 106	AL7	F	286	294	Right-handed alpha
Helix 107	AL8	F	315	321	Right-handed alpha
Helix 108	AL9	F	333	345	Right-handed alpha
Helix 109	AM1	F	373	389	Right-handed alpha
Helix 110	AM2	F	392	400	Right-handed alpha
Helix 111	AM3	F	411	421	Right-handed alpha
Helix 112	AM4	F	425	433	Right-handed alpha
Helix 113	AM5	F	517	520	Right-handed 310
Helix 114	AM6	F	558	562	Right-handed 310

There are 43 sheets in PDB entry 6NQT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	197	first strand
Strand 2	A	168	175	parallel
Strand 3	A	138	144	parallel
Strand 4	A	219	224	parallel
Strand 5	A	311	314	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	348	360	anti-parallel
Strand 3	A	247	256	parallel
Strand 4	A	263	264	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	348	360	anti-parallel
Strand 3	A	301	302	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	274	first strand
Strand 2	A	280	284	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	467	first strand
Strand 2	A	509	512	anti-parallel
Strand 3	A	495	498	anti-parallel
Strand 4	A	490	492	anti-parallel
Strand 5	A	482	484	anti-parallel
Strand 6	A	446	452	anti-parallel
Strand 7	A	455	458	anti-parallel
Strand 8	A	469	472	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	467	first strand
Strand 2	A	509	512	anti-parallel
Strand 3	A	495	498	anti-parallel
Strand 4	A	490	492	anti-parallel
Strand 5	A	482	484	anti-parallel
Strand 6	A	446	452	anti-parallel
Strand 7	A	564	568	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	525	first strand
Strand 2	A	530	533	anti-parallel
Strand 3	A	538	541	anti-parallel
Strand 4	A	551	554	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	197	first strand
Strand 2	B	168	175	parallel
Strand 3	B	138	144	parallel
Strand 4	B	219	224	parallel
Strand 5	B	311	314	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	229	first strand
Strand 2	B	348	360	anti-parallel
Strand 3	B	247	256	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	229	first strand
Strand 2	B	348	360	anti-parallel
Strand 3	B	301	302	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	274	first strand
Strand 2	B	280	284	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	467	first strand
Strand 2	B	509	512	anti-parallel
Strand 3	B	495	498	anti-parallel
Strand 4	B	490	492	anti-parallel
Strand 5	B	482	484	anti-parallel
Strand 6	B	446	452	anti-parallel
Strand 7	B	455	458	anti-parallel
Strand 8	B	469	471	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	467	first strand
Strand 2	B	509	512	anti-parallel
Strand 3	B	495	498	anti-parallel
Strand 4	B	490	492	anti-parallel
Strand 5	B	482	484	anti-parallel
Strand 6	B	446	452	anti-parallel
Strand 7	B	564	568	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	522	525	first strand
Strand 2	B	530	533	anti-parallel
Strand 3	B	538	540	anti-parallel
Strand 4	B	552	553	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	197	first strand
Strand 2	C	168	175	parallel
Strand 3	C	138	144	parallel
Strand 4	C	219	224	parallel
Strand 5	C	311	314	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	229	first strand
Strand 2	C	348	360	anti-parallel
Strand 3	C	247	256	parallel
Strand 4	C	263	264	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	229	first strand
Strand 2	C	348	360	anti-parallel
Strand 3	C	301	302	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	274	first strand
Strand 2	C	280	284	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	467	first strand
Strand 2	C	509	512	anti-parallel
Strand 3	C	495	498	anti-parallel
Strand 4	C	490	492	anti-parallel
Strand 5	C	482	485	anti-parallel
Strand 6	C	444	452	anti-parallel
Strand 7	C	455	458	anti-parallel
Strand 8	C	469	472	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	467	first strand
Strand 2	C	509	512	anti-parallel
Strand 3	C	495	498	anti-parallel
Strand 4	C	490	492	anti-parallel
Strand 5	C	482	485	anti-parallel
Strand 6	C	444	452	anti-parallel
Strand 7	C	564	568	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	522	525	first strand
Strand 2	C	530	533	anti-parallel
Strand 3	C	538	541	anti-parallel
Strand 4	C	551	553	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	197	first strand
Strand 2	D	168	175	parallel
Strand 3	D	138	144	parallel
Strand 4	D	219	224	parallel
Strand 5	D	311	314	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	229	first strand
Strand 2	D	348	360	anti-parallel
Strand 3	D	247	256	parallel
Strand 4	D	263	264	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	229	first strand
Strand 2	D	348	360	anti-parallel
Strand 3	D	301	302	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	274	first strand
Strand 2	D	280	284	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	466	467	first strand
Strand 2	D	509	512	anti-parallel
Strand 3	D	495	498	anti-parallel
Strand 4	D	490	492	anti-parallel
Strand 5	D	482	484	anti-parallel
Strand 6	D	446	452	anti-parallel
Strand 7	D	455	458	anti-parallel
Strand 8	D	469	472	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	466	467	first strand
Strand 2	D	509	512	anti-parallel
Strand 3	D	495	498	anti-parallel
Strand 4	D	490	492	anti-parallel
Strand 5	D	482	484	anti-parallel
Strand 6	D	446	452	anti-parallel
Strand 7	D	564	568	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	522	525	first strand
Strand 2	D	530	533	anti-parallel
Strand 3	D	538	541	anti-parallel
Strand 4	D	551	554	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	197	first strand
Strand 2	E	168	175	parallel
Strand 3	E	138	144	parallel
Strand 4	E	219	224	parallel
Strand 5	E	311	314	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	227	229	first strand
Strand 2	E	348	360	anti-parallel
Strand 3	E	247	256	parallel
Strand 4	E	263	264	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	227	229	first strand
Strand 2	E	348	360	anti-parallel
Strand 3	E	301	302	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	274	first strand
Strand 2	E	280	284	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	509	512	first strand
Strand 2	E	495	498	anti-parallel
Strand 3	E	490	492	anti-parallel
Strand 4	E	482	485	anti-parallel
Strand 5	E	444	451	anti-parallel
Strand 6	E	564	568	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	522	525	first strand
Strand 2	E	530	533	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	538	541	first strand
Strand 2	E	551	554	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	193	194	first strand
Strand 2	F	168	176	parallel
Strand 3	F	197	198	parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	193	194	first strand
Strand 2	F	168	176	parallel
Strand 3	F	138	144	parallel
Strand 4	F	219	224	parallel
Strand 5	F	311	314	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	227	229	first strand
Strand 2	F	348	360	anti-parallel
Strand 3	F	247	256	parallel
Strand 4	F	263	264	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	227	229	first strand
Strand 2	F	348	360	anti-parallel
Strand 3	F	301	302	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	274	first strand
Strand 2	F	280	284	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	444	448	first strand
Strand 2	F	482	485	anti-parallel
Strand 3	F	490	492	anti-parallel
Strand 4	F	495	499	anti-parallel
Strand 5	F	506	512	anti-parallel
Strand 6	F	466	467	anti-parallel

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There are 9 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	444	448	first strand
Strand 2	F	482	485	anti-parallel
Strand 3	F	490	492	anti-parallel
Strand 4	F	495	499	anti-parallel
Strand 5	F	506	512	anti-parallel
Strand 6	F	551	554	anti-parallel
Strand 7	F	538	541	anti-parallel
Strand 8	F	530	533	anti-parallel
Strand 9	F	522	525	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	469	472	first strand
Strand 2	F	455	458	anti-parallel
Strand 3	F	450	452	anti-parallel
Strand 4	F	564	565	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NQT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NQT