Analysis of interatomic Contacts of Structural Units in PDB entry:
6NQU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NQU entry

There is 1 chain in PDB entry 6NQU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 173LEU 830
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6NQU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
173 181Right-handed alpha
Helix 2
AA2
A
189 196Right-handed alpha
Helix 3
AA3
A
196 201Right-handed alpha
Helix 4
AA4
A
203 224Right-handed alpha
Helix 5
AA5
A
230 237Right-handed alpha
Helix 6
AA6
A
245 259Right-handed alpha
Helix 7
AA7
A
287 300Right-handed alpha
Helix 8
AA8
A
340 350Right-handed alpha
Helix 9
AA9
A
371 395Right-handed alpha
Helix 10
AB1
A
407 460Right-handed alpha
Helix 11
AB2
A
476 514Right-handed alpha
Helix 12
AB3
A
522 541Right-handed alpha
Helix 13
AB4
A
543 547Right-handed 310
Helix 14
AB5
A
555 559Right-handed 310
Helix 15
AB6
A
572 580Right-handed alpha
Helix 16
AB7
A
626 632Right-handed alpha
Helix 17
AB8
A
644 654Right-handed alpha
Helix 18
AB9
A
708 715Right-handed alpha
Helix 19
AC1
A
716 718Right-handed 310
Helix 20
AC2
A
719 736Right-handed alpha
Helix 21
AC3
A
769 778Right-handed alpha
Helix 22
AC4
A
810 830Right-handed alpha
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There are 6 sheets in PDB entry 6NQU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 585first strand
Strand 2
A
303 307parallel
Strand 3
A
280 284parallel
Strand 4
A
620 623parallel
Strand 5
A
796 798parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
325 328anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
564 567anti-parallel
Strand 3
A
353 355anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
677 680parallel
Strand 3
A
690 695anti-parallel
Strand 4
A
702 707anti-parallel
Strand 5
A
660 665anti-parallel
Strand 6
A
745 748anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 618first strand
Strand 2
A
600 606anti-parallel
Strand 3
A
588 595anti-parallel
Strand 4
A
638 640parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
655 656first strand
Strand 2
A
762 763anti-parallel
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