Analysis of interatomic Contacts of Structural Units in PDB entry:
6NRV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NRV entry

There are 13 chains in PDB entry 6NRV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1	GLY 146
B	VAL 1	GLY 146
C	VAL 1	GLY 146
D	VAL 1	GLY 146
E	VAL 1	GLY 146
F	VAL 1	GLY 146
G	VAL 1	GLY 146
H	VAL 1	GLY 146
I	VAL 1	GLY 146
J	VAL 1	GLY 146
K	VAL 1	GLY 146
L	VAL 1	GLY 146
M	VAL 1	GLY 146

There are 13 helices in PDB entry 6NRV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	102	Right-handed 310
Helix 2	AA2	B	98	102	Right-handed 310
Helix 3	AA3	C	98	102	Right-handed 310
Helix 4	AA4	D	98	102	Right-handed 310
Helix 5	AA5	E	98	102	Right-handed 310
Helix 6	AA6	F	98	102	Right-handed 310
Helix 7	AA7	G	98	102	Right-handed 310
Helix 8	AA8	H	98	102	Right-handed 310
Helix 9	AA9	I	98	102	Right-handed 310
Helix 10	AB1	J	98	102	Right-handed 310
Helix 11	AB2	K	98	102	Right-handed 310
Helix 12	AB3	L	98	102	Right-handed 310
Helix 13	AB4	M	98	102	Right-handed 310

There are 39 sheets in PDB entry 6NRV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	A	3	10	parallel
Strand 3	B	134	141	anti-parallel
Strand 4	B	67	70	anti-parallel
Strand 5	B	73	79	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	C	3	10	parallel
Strand 3	A	134	141	anti-parallel
Strand 4	A	67	70	anti-parallel
Strand 5	A	73	79	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	115	120	anti-parallel
Strand 3	A	81	84	anti-parallel
Strand 4	A	87	88	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	58	60	anti-parallel
Strand 3	A	143	145	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	10	first strand
Strand 2	D	134	141	anti-parallel
Strand 3	D	67	70	anti-parallel
Strand 4	D	73	79	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	115	120	anti-parallel
Strand 3	B	81	84	anti-parallel
Strand 4	B	87	88	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	58	60	anti-parallel
Strand 3	B	143	145	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	47	first strand
Strand 2	C	115	120	anti-parallel
Strand 3	C	81	84	anti-parallel
Strand 4	C	87	88	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	58	60	anti-parallel
Strand 3	C	143	145	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	79	first strand
Strand 2	C	67	70	anti-parallel
Strand 3	C	134	141	anti-parallel
Strand 4	E	3	10	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	D	3	10	parallel
Strand 3	F	134	141	anti-parallel
Strand 4	F	67	70	anti-parallel
Strand 5	F	73	79	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	47	first strand
Strand 2	D	115	120	anti-parallel
Strand 3	D	81	84	anti-parallel
Strand 4	D	87	88	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	58	60	anti-parallel
Strand 3	D	143	145	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	G	3	10	parallel
Strand 3	E	134	141	anti-parallel
Strand 4	E	67	70	anti-parallel
Strand 5	E	73	79	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	47	first strand
Strand 2	E	115	120	anti-parallel
Strand 3	E	81	84	anti-parallel
Strand 4	E	87	88	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	96	first strand
Strand 2	E	58	60	anti-parallel
Strand 3	E	143	145	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	F	3	10	parallel
Strand 3	H	134	141	anti-parallel
Strand 4	H	67	70	anti-parallel
Strand 5	H	73	79	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	47	first strand
Strand 2	F	115	120	anti-parallel
Strand 3	F	81	84	anti-parallel
Strand 4	F	87	88	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	96	first strand
Strand 2	F	58	60	anti-parallel
Strand 3	F	143	145	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	31	first strand
Strand 2	I	3	10	parallel
Strand 3	G	134	141	anti-parallel
Strand 4	G	67	70	anti-parallel
Strand 5	G	73	79	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	47	first strand
Strand 2	G	115	120	anti-parallel
Strand 3	G	81	84	anti-parallel
Strand 4	G	87	88	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	96	first strand
Strand 2	G	58	60	anti-parallel
Strand 3	G	143	145	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	10	first strand
Strand 2	J	134	141	anti-parallel
Strand 3	J	67	70	anti-parallel
Strand 4	J	73	79	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	47	first strand
Strand 2	H	115	120	anti-parallel
Strand 3	H	81	84	anti-parallel
Strand 4	H	87	88	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	94	96	first strand
Strand 2	H	58	60	anti-parallel
Strand 3	H	143	145	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	43	47	first strand
Strand 2	I	115	120	anti-parallel
Strand 3	I	81	84	anti-parallel
Strand 4	I	87	88	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	94	96	first strand
Strand 2	I	58	60	anti-parallel
Strand 3	I	143	145	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	73	79	first strand
Strand 2	I	67	70	anti-parallel
Strand 3	I	134	141	anti-parallel
Strand 4	K	3	10	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	10	first strand
Strand 2	L	134	141	anti-parallel
Strand 3	L	67	70	anti-parallel
Strand 4	L	73	79	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	47	first strand
Strand 2	J	115	120	anti-parallel
Strand 3	J	81	84	anti-parallel
Strand 4	J	87	88	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	94	96	first strand
Strand 2	J	58	60	anti-parallel
Strand 3	J	143	145	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	30	31	first strand
Strand 2	M	3	10	parallel
Strand 3	K	134	141	anti-parallel
Strand 4	K	67	70	anti-parallel
Strand 5	K	73	79	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	43	47	first strand
Strand 2	K	115	120	anti-parallel
Strand 3	K	81	84	anti-parallel
Strand 4	K	87	88	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	94	96	first strand
Strand 2	K	58	60	anti-parallel
Strand 3	K	143	145	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	43	47	first strand
Strand 2	L	115	120	anti-parallel
Strand 3	L	81	84	anti-parallel
Strand 4	L	87	88	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	94	96	first strand
Strand 2	L	58	60	anti-parallel
Strand 3	L	143	145	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	43	47	first strand
Strand 2	M	115	120	anti-parallel
Strand 3	M	81	84	anti-parallel
Strand 4	M	87	88	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	94	96	first strand
Strand 2	M	58	60	anti-parallel
Strand 3	M	143	145	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	73	79	first strand
Strand 2	M	67	70	anti-parallel
Strand 3	M	135	136	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NRV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NRV