Analysis of interatomic Contacts of Structural Units in PDB entry:
6NST

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NST entry

There are 5 chains in PDB entry 6NST (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 307
B	SER 2	VAL 306
C	MET 1	LYS 307
D	SER 2	LYS 307
E	MET 1	ALA 86

There are 58 helices in PDB entry 6NST. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	34	Right-handed alpha
Helix 2	AA2	A	54	69	Right-handed alpha
Helix 3	AA3	A	76	90	Right-handed alpha
Helix 4	AA4	A	133	139	Right-handed alpha
Helix 5	AA5	A	162	164	Right-handed 310
Helix 6	AA6	A	165	178	Right-handed alpha
Helix 7	AA7	A	219	232	Right-handed alpha
Helix 8	AA8	A	242	248	Right-handed alpha
Helix 9	AA9	A	278	293	Right-handed alpha
Helix 10	AB1	A	299	301	Right-handed 310
Helix 11	AB2	B	28	34	Right-handed alpha
Helix 12	AB3	B	54	69	Right-handed alpha
Helix 13	AB4	B	76	90	Right-handed alpha
Helix 14	AB5	B	134	139	Right-handed alpha
Helix 15	AB6	B	162	164	Right-handed 310
Helix 16	AB7	B	165	178	Right-handed alpha
Helix 17	AB8	B	219	232	Right-handed alpha
Helix 18	AB9	B	242	248	Right-handed alpha
Helix 19	AC1	B	278	293	Right-handed alpha
Helix 20	AC2	B	299	301	Right-handed 310
Helix 21	AC3	C	28	34	Right-handed alpha
Helix 22	AC4	C	54	69	Right-handed alpha
Helix 23	AC5	C	76	90	Right-handed alpha
Helix 24	AC6	C	162	164	Right-handed 310
Helix 25	AC7	C	165	178	Right-handed alpha
Helix 26	AC8	C	219	232	Right-handed alpha
Helix 27	AC9	C	242	248	Right-handed alpha
Helix 28	AD1	C	278	293	Right-handed alpha
Helix 29	AD2	C	299	301	Right-handed 310
Helix 30	AD3	D	28	34	Right-handed alpha
Helix 31	AD4	D	54	69	Right-handed alpha
Helix 32	AD5	D	76	90	Right-handed alpha
Helix 33	AD6	D	134	139	Right-handed alpha
Helix 34	AD7	D	162	164	Right-handed 310
Helix 35	AD8	D	165	178	Right-handed alpha
Helix 36	AD9	D	219	232	Right-handed alpha
Helix 37	AE1	D	242	248	Right-handed alpha
Helix 38	AE2	D	278	293	Right-handed alpha
Helix 39	AE3	D	299	301	Right-handed 310
Helix 40	AE4	E	28	34	Right-handed alpha
Helix 41	AE5	E	54	69	Right-handed alpha
Helix 42	AE6	E	76	90	Right-handed alpha
Helix 43	AE7	E	135	139	Right-handed alpha
Helix 44	AE8	E	162	164	Right-handed 310
Helix 45	AE9	E	165	178	Right-handed alpha
Helix 46	AF1	E	219	232	Right-handed alpha
Helix 47	AF2	E	242	248	Right-handed alpha
Helix 48	AF3	E	278	293	Right-handed alpha
Helix 49	AF4	E	299	301	Right-handed 310
Helix 50	AF5	F	28	34	Right-handed alpha
Helix 51	AF6	F	54	69	Right-handed alpha
Helix 52	AF7	F	76	90	Right-handed alpha
Helix 53	AF8	F	162	164	Right-handed 310
Helix 54	AF9	F	165	178	Right-handed alpha
Helix 55	AG1	F	219	232	Right-handed alpha
Helix 56	AG2	F	242	248	Right-handed alpha
Helix 57	AG3	F	278	293	Right-handed alpha
Helix 58	AG4	F	299	301	Right-handed 310

There are 27 sheets in PDB entry 6NST. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	9	12	anti-parallel
Strand 3	A	118	126	anti-parallel
Strand 4	A	96	104	anti-parallel
Strand 5	A	36	38	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	9	12	anti-parallel
Strand 3	A	118	126	anti-parallel
Strand 4	A	96	104	anti-parallel
Strand 5	A	41	46	anti-parallel
Strand 6	A	49	53	anti-parallel
Strand 7	A	303	305	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	B	23	25	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	195	first strand
Strand 2	A	182	186	anti-parallel
Strand 3	A	140	148	parallel
Strand 4	A	260	267	parallel
Strand 5	A	251	256	anti-parallel
Strand 6	A	199	204	anti-parallel
Strand 7	A	207	210	anti-parallel
Strand 8	A	235	238	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	195	first strand
Strand 2	A	182	186	anti-parallel
Strand 3	A	140	148	parallel
Strand 4	A	260	267	parallel
Strand 5	A	270	271	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	9	12	anti-parallel
Strand 3	B	118	126	anti-parallel
Strand 4	B	96	104	anti-parallel
Strand 5	B	36	38	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	9	12	anti-parallel
Strand 3	B	118	126	anti-parallel
Strand 4	B	96	104	anti-parallel
Strand 5	B	41	46	anti-parallel
Strand 6	B	49	53	anti-parallel
Strand 7	B	303	305	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	195	first strand
Strand 2	B	182	186	anti-parallel
Strand 3	B	140	144	parallel
Strand 4	B	260	267	parallel
Strand 5	B	251	256	anti-parallel
Strand 6	B	199	204	anti-parallel
Strand 7	B	207	210	anti-parallel
Strand 8	B	236	238	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	195	first strand
Strand 2	B	182	186	anti-parallel
Strand 3	B	140	144	parallel
Strand 4	B	260	267	parallel
Strand 5	B	270	271	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	18	first strand
Strand 2	C	9	12	anti-parallel
Strand 3	C	118	125	anti-parallel
Strand 4	C	96	104	anti-parallel
Strand 5	C	36	38	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	18	first strand
Strand 2	C	9	12	anti-parallel
Strand 3	C	118	125	anti-parallel
Strand 4	C	96	104	anti-parallel
Strand 5	C	41	46	anti-parallel
Strand 6	C	49	53	anti-parallel
Strand 7	C	303	305	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	D	23	25	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	195	first strand
Strand 2	C	182	186	anti-parallel
Strand 3	C	140	148	parallel
Strand 4	C	260	267	parallel
Strand 5	C	251	256	anti-parallel
Strand 6	C	199	204	anti-parallel
Strand 7	C	207	211	anti-parallel
Strand 8	C	236	239	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	195	first strand
Strand 2	C	182	186	anti-parallel
Strand 3	C	140	148	parallel
Strand 4	C	260	267	parallel
Strand 5	C	270	271	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	18	first strand
Strand 2	D	9	12	anti-parallel
Strand 3	D	118	125	anti-parallel
Strand 4	D	96	104	anti-parallel
Strand 5	D	36	38	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	18	first strand
Strand 2	D	9	12	anti-parallel
Strand 3	D	118	125	anti-parallel
Strand 4	D	96	104	anti-parallel
Strand 5	D	41	46	anti-parallel
Strand 6	D	49	53	anti-parallel
Strand 7	D	303	305	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	195	first strand
Strand 2	D	182	186	anti-parallel
Strand 3	D	140	148	parallel
Strand 4	D	260	267	parallel
Strand 5	D	251	256	anti-parallel
Strand 6	D	199	204	anti-parallel
Strand 7	D	207	210	anti-parallel
Strand 8	D	235	238	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	195	first strand
Strand 2	D	182	186	anti-parallel
Strand 3	D	140	148	parallel
Strand 4	D	260	267	parallel
Strand 5	D	270	271	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	18	first strand
Strand 2	E	9	12	anti-parallel
Strand 3	E	118	125	anti-parallel
Strand 4	E	96	104	anti-parallel
Strand 5	E	36	38	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	18	first strand
Strand 2	E	9	12	anti-parallel
Strand 3	E	118	125	anti-parallel
Strand 4	E	96	104	anti-parallel
Strand 5	E	41	46	anti-parallel
Strand 6	E	49	53	anti-parallel
Strand 7	E	303	305	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	25	first strand
Strand 2	F	23	25	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	195	first strand
Strand 2	E	182	186	anti-parallel
Strand 3	E	140	144	parallel
Strand 4	E	260	267	parallel
Strand 5	E	251	256	anti-parallel
Strand 6	E	199	204	anti-parallel
Strand 7	E	207	210	anti-parallel
Strand 8	E	236	238	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	195	first strand
Strand 2	E	182	186	anti-parallel
Strand 3	E	140	144	parallel
Strand 4	E	260	267	parallel
Strand 5	E	270	271	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	18	first strand
Strand 2	F	9	12	anti-parallel
Strand 3	F	118	125	anti-parallel
Strand 4	F	96	104	anti-parallel
Strand 5	F	36	38	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	18	first strand
Strand 2	F	9	12	anti-parallel
Strand 3	F	118	125	anti-parallel
Strand 4	F	96	104	anti-parallel
Strand 5	F	41	46	anti-parallel
Strand 6	F	49	53	anti-parallel
Strand 7	F	303	305	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	192	195	first strand
Strand 2	F	182	186	anti-parallel
Strand 3	F	140	144	parallel
Strand 4	F	260	267	parallel
Strand 5	F	251	256	anti-parallel
Strand 6	F	199	204	anti-parallel
Strand 7	F	207	211	anti-parallel
Strand 8	F	236	239	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	192	195	first strand
Strand 2	F	182	186	anti-parallel
Strand 3	F	140	144	parallel
Strand 4	F	260	267	parallel
Strand 5	F	270	271	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NST

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NST