Analysis of interatomic Contacts of Structural Units in PDB entry:
6NT0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NT0 entry

There are 4 chains in PDB entry 6NT0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 38	GLU 719
B	ASP 38	ASP 714
C	ASP 38	ASP 716
D	ASP 38	GLY 715

There are113 helices in PDB entry 6NT0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	45	Right-handed 310
Helix 2	AA2	A	81	93	Right-handed alpha
Helix 3	AA3	A	124	128	Right-handed 310
Helix 4	AA4	A	184	186	Right-handed 310
Helix 5	AA5	A	187	196	Right-handed alpha
Helix 6	AA6	A	210	220	Right-handed alpha
Helix 7	AA7	A	223	231	Right-handed alpha
Helix 8	AA8	A	232	236	Right-handed 310
Helix 9	AA9	A	239	243	Right-handed 310
Helix 10	AB1	A	277	288	Right-handed alpha
Helix 11	AB2	A	290	302	Right-handed alpha
Helix 12	AB3	A	316	320	Right-handed 310
Helix 13	AB4	A	355	360	Right-handed alpha
Helix 14	AB5	A	379	398	Right-handed alpha
Helix 15	AB6	A	401	405	Right-handed 310
Helix 16	AB7	A	472	476	Right-handed 310
Helix 17	AB8	A	479	488	Right-handed alpha
Helix 18	AB9	A	490	506	Right-handed alpha
Helix 19	AC1	A	510	525	Right-handed alpha
Helix 20	AC2	A	525	537	Right-handed alpha
Helix 21	AC3	A	544	548	Right-handed 310
Helix 22	AC4	A	580	595	Right-handed alpha
Helix 23	AC5	A	618	622	Right-handed 310
Helix 24	AC6	A	630	635	Right-handed 310
Helix 25	AC7	A	636	641	Right-handed 310
Helix 26	AC8	A	648	660	Right-handed alpha
Helix 27	AC9	A	670	677	Right-handed alpha
Helix 28	AD1	A	690	705	Right-handed alpha
Helix 29	AD2	A	707	711	Right-handed 310
Helix 30	AD3	B	40	45	Right-handed 310
Helix 31	AD4	B	81	93	Right-handed alpha
Helix 32	AD5	B	124	128	Right-handed 310
Helix 33	AD6	B	184	186	Right-handed 310
Helix 34	AD7	B	187	196	Right-handed alpha
Helix 35	AD8	B	210	220	Right-handed alpha
Helix 36	AD9	B	223	231	Right-handed alpha
Helix 37	AE1	B	232	236	Right-handed 310
Helix 38	AE2	B	239	243	Right-handed 310
Helix 39	AE3	B	277	288	Right-handed alpha
Helix 40	AE4	B	290	302	Right-handed alpha
Helix 41	AE5	B	316	320	Right-handed 310
Helix 42	AE6	B	355	360	Right-handed alpha
Helix 43	AE7	B	379	398	Right-handed alpha
Helix 44	AE8	B	401	405	Right-handed 310
Helix 45	AE9	B	472	476	Right-handed 310
Helix 46	AF1	B	479	488	Right-handed alpha
Helix 47	AF2	B	490	506	Right-handed alpha
Helix 48	AF3	B	510	525	Right-handed alpha
Helix 49	AF4	B	525	536	Right-handed alpha
Helix 50	AF5	B	544	548	Right-handed 310
Helix 51	AF6	B	580	595	Right-handed alpha
Helix 52	AF7	B	618	622	Right-handed 310
Helix 53	AF8	B	630	641	Right-handed 310
Helix 54	AF9	B	648	660	Right-handed alpha
Helix 55	AG1	B	670	677	Right-handed alpha
Helix 56	AG2	B	690	705	Right-handed alpha
Helix 57	AG3	B	707	711	Right-handed 310
Helix 58	AG4	C	40	45	Right-handed 310
Helix 59	AG5	C	81	93	Right-handed alpha
Helix 60	AG6	C	124	128	Right-handed 310
Helix 61	AG7	C	184	186	Right-handed 310
Helix 62	AG8	C	187	196	Right-handed alpha
Helix 63	AG9	C	210	220	Right-handed alpha
Helix 64	AH1	C	223	232	Right-handed alpha
Helix 65	AH2	C	233	236	Right-handed 310
Helix 66	AH3	C	239	243	Right-handed 310
Helix 67	AH4	C	277	288	Right-handed alpha
Helix 68	AH5	C	290	302	Right-handed alpha
Helix 69	AH6	C	316	320	Right-handed 310
Helix 70	AH7	C	355	360	Right-handed alpha
Helix 71	AH8	C	379	398	Right-handed alpha
Helix 72	AH9	C	401	405	Right-handed 310
Helix 73	AI1	C	472	476	Right-handed 310
Helix 74	AI2	C	479	488	Right-handed alpha
Helix 75	AI3	C	490	506	Right-handed alpha
Helix 76	AI4	C	510	525	Right-handed alpha
Helix 77	AI5	C	525	537	Right-handed alpha
Helix 78	AI6	C	544	548	Right-handed 310
Helix 79	AI7	C	580	595	Right-handed alpha
Helix 80	AI8	C	618	622	Right-handed 310
Helix 81	AI9	C	630	635	Right-handed 310
Helix 82	AJ1	C	648	660	Right-handed alpha
Helix 83	AJ2	C	670	677	Right-handed alpha
Helix 84	AJ3	C	690	705	Right-handed alpha
Helix 85	AJ4	C	707	711	Right-handed 310
Helix 86	AJ5	D	40	45	Right-handed 310
Helix 87	AJ6	D	81	93	Right-handed alpha
Helix 88	AJ7	D	124	128	Right-handed 310
Helix 89	AJ8	D	184	186	Right-handed 310
Helix 90	AJ9	D	187	196	Right-handed alpha
Helix 91	AK1	D	210	220	Right-handed alpha
Helix 92	AK2	D	223	232	Right-handed alpha
Helix 93	AK3	D	233	236	Right-handed 310
Helix 94	AK4	D	239	243	Right-handed 310
Helix 95	AK5	D	277	288	Right-handed alpha
Helix 96	AK6	D	290	302	Right-handed alpha
Helix 97	AK7	D	316	320	Right-handed 310
Helix 98	AK8	D	355	360	Right-handed alpha
Helix 99	AK9	D	379	398	Right-handed alpha
Helix 100	AL1	D	401	405	Right-handed 310
Helix 101	AL2	D	472	476	Right-handed 310
Helix 102	AL3	D	479	488	Right-handed alpha
Helix 103	AL4	D	490	506	Right-handed alpha
Helix 104	AL5	D	510	525	Right-handed alpha
Helix 105	AL6	D	525	537	Right-handed alpha
Helix 106	AL7	D	580	595	Right-handed alpha
Helix 107	AL8	D	618	622	Right-handed 310
Helix 108	AL9	D	630	635	Right-handed 310
Helix 109	AM1	D	636	641	Right-handed 310
Helix 110	AM2	D	648	660	Right-handed alpha
Helix 111	AM3	D	670	677	Right-handed alpha
Helix 112	AM4	D	690	705	Right-handed alpha
Helix 113	AM5	D	707	711	Right-handed 310

There are 15 sheets in PDB entry 6NT0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	C	427	428	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	D	462	468	anti-parallel
Strand 3	C	462	468	anti-parallel
Strand 4	B	70	71	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	375	first strand
Strand 2	A	251	254	anti-parallel
Strand 3	A	260	269	anti-parallel
Strand 4	A	307	315	anti-parallel
Strand 5	A	342	351	anti-parallel
Strand 6	A	105	114	anti-parallel
Strand 7	A	133	141	anti-parallel
Strand 8	A	158	165	anti-parallel
Strand 9	A	168	175	anti-parallel
Strand 10	A	245	246	anti-parallel
Strand 11	A	260	269	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	C	47	48	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	B	462	468	anti-parallel
Strand 3	A	462	468	anti-parallel
Strand 4	D	70	71	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	613	first strand
Strand 2	A	598	603	parallel
Strand 3	A	570	574	parallel
Strand 4	A	624	627	parallel
Strand 5	A	664	667	parallel
Strand 6	A	686	689	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	D	427	428	parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	B	251	254	anti-parallel
Strand 3	B	260	269	anti-parallel
Strand 4	B	307	315	anti-parallel
Strand 5	B	342	351	anti-parallel
Strand 6	B	105	114	anti-parallel
Strand 7	B	133	141	anti-parallel
Strand 8	B	158	165	anti-parallel
Strand 9	B	168	175	anti-parallel
Strand 10	B	245	246	anti-parallel
Strand 11	B	260	269	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	428	first strand
Strand 2	D	47	48	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	613	first strand
Strand 2	B	598	603	parallel
Strand 3	B	570	574	parallel
Strand 4	B	624	627	parallel
Strand 5	B	664	667	parallel
Strand 6	B	686	689	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	60	62	anti-parallel

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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	375	first strand
Strand 2	C	251	254	anti-parallel
Strand 3	C	260	269	anti-parallel
Strand 4	C	307	315	anti-parallel
Strand 5	C	342	351	anti-parallel
Strand 6	C	105	114	anti-parallel
Strand 7	C	133	141	anti-parallel
Strand 8	C	158	165	anti-parallel
Strand 9	C	168	175	anti-parallel
Strand 10	C	245	246	anti-parallel
Strand 11	C	260	269	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	612	613	first strand
Strand 2	C	598	603	parallel
Strand 3	C	570	574	parallel
Strand 4	C	624	627	parallel
Strand 5	C	664	667	parallel
Strand 6	C	686	689	parallel

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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	375	first strand
Strand 2	D	251	254	anti-parallel
Strand 3	D	260	269	anti-parallel
Strand 4	D	307	315	anti-parallel
Strand 5	D	342	351	anti-parallel
Strand 6	D	105	114	anti-parallel
Strand 7	D	133	141	anti-parallel
Strand 8	D	158	165	anti-parallel
Strand 9	D	168	175	anti-parallel
Strand 10	D	245	246	anti-parallel
Strand 11	D	260	269	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	612	613	first strand
Strand 2	D	598	603	parallel
Strand 3	D	570	574	parallel
Strand 4	D	624	627	parallel
Strand 5	D	664	667	parallel
Strand 6	D	686	689	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NT0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NT0