Analysis of interatomic Contacts of Structural Units in PDB entry:
6NT1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NT1 entry

There are 4 chains in PDB entry 6NT1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 38	GLU 719
B	ASP 38	ASP 714
C	ASP 38	ASP 716
D	ASP 38	GLY 715

There are116 helices in PDB entry 6NT1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	45	Right-handed 310
Helix 2	AA2	A	81	93	Right-handed alpha
Helix 3	AA3	A	124	128	Right-handed 310
Helix 4	AA4	A	184	186	Right-handed 310
Helix 5	AA5	A	187	196	Right-handed alpha
Helix 6	AA6	A	210	220	Right-handed alpha
Helix 7	AA7	A	223	231	Right-handed alpha
Helix 8	AA8	A	232	236	Right-handed 310
Helix 9	AA9	A	239	243	Right-handed 310
Helix 10	AB1	A	277	288	Right-handed alpha
Helix 11	AB2	A	290	302	Right-handed alpha
Helix 12	AB3	A	316	320	Right-handed 310
Helix 13	AB4	A	355	360	Right-handed alpha
Helix 14	AB5	A	379	398	Right-handed alpha
Helix 15	AB6	A	401	405	Right-handed 310
Helix 16	AB7	A	472	476	Right-handed 310
Helix 17	AB8	A	479	488	Right-handed alpha
Helix 18	AB9	A	490	506	Right-handed alpha
Helix 19	AC1	A	510	525	Right-handed alpha
Helix 20	AC2	A	525	537	Right-handed alpha
Helix 21	AC3	A	544	548	Right-handed 310
Helix 22	AC4	A	580	595	Right-handed alpha
Helix 23	AC5	A	618	622	Right-handed 310
Helix 24	AC6	A	630	635	Right-handed 310
Helix 25	AC7	A	637	641	Right-handed 310
Helix 26	AC8	A	648	660	Right-handed alpha
Helix 27	AC9	A	670	677	Right-handed alpha
Helix 28	AD1	A	690	705	Right-handed alpha
Helix 29	AD2	A	707	711	Right-handed 310
Helix 30	AD3	B	40	45	Right-handed 310
Helix 31	AD4	B	81	93	Right-handed alpha
Helix 32	AD5	B	124	128	Right-handed 310
Helix 33	AD6	B	184	186	Right-handed 310
Helix 34	AD7	B	187	196	Right-handed alpha
Helix 35	AD8	B	210	220	Right-handed alpha
Helix 36	AD9	B	223	232	Right-handed alpha
Helix 37	AE1	B	233	236	Right-handed 310
Helix 38	AE2	B	239	243	Right-handed 310
Helix 39	AE3	B	277	288	Right-handed alpha
Helix 40	AE4	B	290	302	Right-handed alpha
Helix 41	AE5	B	316	320	Right-handed 310
Helix 42	AE6	B	355	360	Right-handed alpha
Helix 43	AE7	B	379	398	Right-handed alpha
Helix 44	AE8	B	401	409	Right-handed 310
Helix 45	AE9	B	472	476	Right-handed 310
Helix 46	AF1	B	479	488	Right-handed alpha
Helix 47	AF2	B	490	506	Right-handed alpha
Helix 48	AF3	B	510	525	Right-handed alpha
Helix 49	AF4	B	525	537	Right-handed alpha
Helix 50	AF5	B	544	548	Right-handed 310
Helix 51	AF6	B	580	594	Right-handed alpha
Helix 52	AF7	B	618	622	Right-handed 310
Helix 53	AF8	B	630	635	Right-handed 310
Helix 54	AF9	B	637	641	Right-handed 310
Helix 55	AG1	B	648	660	Right-handed alpha
Helix 56	AG2	B	670	677	Right-handed alpha
Helix 57	AG3	B	690	705	Right-handed alpha
Helix 58	AG4	B	707	711	Right-handed 310
Helix 59	AG5	C	40	45	Right-handed 310
Helix 60	AG6	C	81	93	Right-handed alpha
Helix 61	AG7	C	124	128	Right-handed 310
Helix 62	AG8	C	184	186	Right-handed 310
Helix 63	AG9	C	187	196	Right-handed alpha
Helix 64	AH1	C	210	220	Right-handed alpha
Helix 65	AH2	C	223	231	Right-handed alpha
Helix 66	AH3	C	232	236	Right-handed 310
Helix 67	AH4	C	239	243	Right-handed 310
Helix 68	AH5	C	277	288	Right-handed alpha
Helix 69	AH6	C	290	302	Right-handed alpha
Helix 70	AH7	C	316	320	Right-handed 310
Helix 71	AH8	C	355	360	Right-handed alpha
Helix 72	AH9	C	379	398	Right-handed alpha
Helix 73	AI1	C	401	405	Right-handed 310
Helix 74	AI2	C	472	476	Right-handed 310
Helix 75	AI3	C	479	488	Right-handed alpha
Helix 76	AI4	C	490	506	Right-handed alpha
Helix 77	AI5	C	510	525	Right-handed alpha
Helix 78	AI6	C	525	537	Right-handed alpha
Helix 79	AI7	C	544	548	Right-handed 310
Helix 80	AI8	C	580	595	Right-handed alpha
Helix 81	AI9	C	618	622	Right-handed 310
Helix 82	AJ1	C	630	635	Right-handed 310
Helix 83	AJ2	C	637	641	Right-handed 310
Helix 84	AJ3	C	648	660	Right-handed alpha
Helix 85	AJ4	C	670	677	Right-handed alpha
Helix 86	AJ5	C	690	705	Right-handed alpha
Helix 87	AJ6	C	707	711	Right-handed 310
Helix 88	AJ7	D	40	45	Right-handed 310
Helix 89	AJ8	D	81	93	Right-handed alpha
Helix 90	AJ9	D	124	128	Right-handed 310
Helix 91	AK1	D	184	186	Right-handed 310
Helix 92	AK2	D	187	196	Right-handed alpha
Helix 93	AK3	D	210	220	Right-handed alpha
Helix 94	AK4	D	223	231	Right-handed alpha
Helix 95	AK5	D	232	236	Right-handed 310
Helix 96	AK6	D	239	243	Right-handed 310
Helix 97	AK7	D	277	288	Right-handed alpha
Helix 98	AK8	D	290	302	Right-handed alpha
Helix 99	AK9	D	316	320	Right-handed 310
Helix 100	AL1	D	355	360	Right-handed alpha
Helix 101	AL2	D	379	398	Right-handed alpha
Helix 102	AL3	D	401	409	Right-handed 310
Helix 103	AL4	D	472	476	Right-handed 310
Helix 104	AL5	D	479	488	Right-handed alpha
Helix 105	AL6	D	490	506	Right-handed alpha
Helix 106	AL7	D	510	525	Right-handed alpha
Helix 107	AL8	D	525	537	Right-handed alpha
Helix 108	AL9	D	544	548	Right-handed 310
Helix 109	AM1	D	580	595	Right-handed alpha
Helix 110	AM2	D	618	622	Right-handed 310
Helix 111	AM3	D	630	635	Right-handed 310
Helix 112	AM4	D	636	641	Right-handed 310
Helix 113	AM5	D	648	660	Right-handed alpha
Helix 114	AM6	D	670	677	Right-handed alpha
Helix 115	AM7	D	690	705	Right-handed alpha
Helix 116	AM8	D	707	711	Right-handed 310

There are 15 sheets in PDB entry 6NT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	C	427	428	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	D	462	468	anti-parallel
Strand 3	C	462	468	anti-parallel
Strand 4	B	70	71	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	375	first strand
Strand 2	A	251	254	anti-parallel
Strand 3	A	260	269	anti-parallel
Strand 4	A	307	315	anti-parallel
Strand 5	A	342	351	anti-parallel
Strand 6	A	105	114	anti-parallel
Strand 7	A	133	141	anti-parallel
Strand 8	A	158	165	anti-parallel
Strand 9	A	168	175	anti-parallel
Strand 10	A	245	246	anti-parallel
Strand 11	A	260	269	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	C	47	48	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	B	462	468	anti-parallel
Strand 3	A	462	468	anti-parallel
Strand 4	D	70	71	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	613	first strand
Strand 2	A	598	603	parallel
Strand 3	A	570	574	parallel
Strand 4	A	624	627	parallel
Strand 5	A	664	667	parallel
Strand 6	A	686	689	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	D	427	428	parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	B	251	254	anti-parallel
Strand 3	B	260	269	anti-parallel
Strand 4	B	307	315	anti-parallel
Strand 5	B	342	351	anti-parallel
Strand 6	B	105	114	anti-parallel
Strand 7	B	133	141	anti-parallel
Strand 8	B	158	165	anti-parallel
Strand 9	B	168	175	anti-parallel
Strand 10	B	245	246	anti-parallel
Strand 11	B	260	269	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	428	first strand
Strand 2	D	47	48	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	613	first strand
Strand 2	B	598	603	parallel
Strand 3	B	570	574	parallel
Strand 4	B	624	627	parallel
Strand 5	B	664	667	parallel
Strand 6	B	686	689	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	60	62	anti-parallel

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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	375	first strand
Strand 2	C	251	254	anti-parallel
Strand 3	C	260	269	anti-parallel
Strand 4	C	307	315	anti-parallel
Strand 5	C	342	351	anti-parallel
Strand 6	C	105	114	anti-parallel
Strand 7	C	133	141	anti-parallel
Strand 8	C	158	165	anti-parallel
Strand 9	C	168	175	anti-parallel
Strand 10	C	245	246	anti-parallel
Strand 11	C	260	269	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	612	613	first strand
Strand 2	C	598	603	parallel
Strand 3	C	570	574	parallel
Strand 4	C	624	627	parallel
Strand 5	C	664	667	parallel
Strand 6	C	686	689	parallel

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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	375	first strand
Strand 2	D	251	254	anti-parallel
Strand 3	D	260	269	anti-parallel
Strand 4	D	307	315	anti-parallel
Strand 5	D	342	351	anti-parallel
Strand 6	D	105	114	anti-parallel
Strand 7	D	133	141	anti-parallel
Strand 8	D	158	165	anti-parallel
Strand 9	D	168	175	anti-parallel
Strand 10	D	245	246	anti-parallel
Strand 11	D	260	269	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	612	613	first strand
Strand 2	D	598	603	parallel
Strand 3	D	570	574	parallel
Strand 4	D	624	627	parallel
Strand 5	D	664	667	parallel
Strand 6	D	686	689	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NT1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NT1